Geoff MacIntyre

According to our database, Geoff MacIntyre authored at least 21 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

CNpare: matching DNA copy number profiles.

Blas Chaves-Urbano, Barbara Hernando, Maria J. Garcia, Geoff MacIntyre

Bioinform., 2022

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora

Nat., 2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

2014

Establishing and Managing a Global Student Network.

Avinash Kumar Shanmugam, Geoff MacIntyre

PLoS Comput. Biol., 2014

Paving the Way Towards a Successful and Fulfilling Career in Computational Biology.

Olugbenga Oluseun Oluwagbemi, Marion O. Adebiyi, Segun A. Fatumo, Geoff MacIntyre

PLoS Comput. Biol., 2014

Workshops: A Great Way to Enhance and Supplement a Degree.

Segun A. Fatumo, Sayane Shome, Geoff MacIntyre

PLoS Comput. Biol., 2014

Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.

Jan Schröder, Arthur L. Hsu, Samantha E. Boyle, Geoff MacIntyre, Marek Cmero, Richard W. Tothill, Ricky W. Johnstone, Mark Shackleton, Anthony T. Papenfuss

Bioinform., 2014

2013

Breaking the Ice and Forging Links: The Importance of Socializing in Research.

Miranda D. Stobbe, Tarun Mishra, Geoff MacIntyre

PLoS Comput. Biol., 2013

Ten Simple Rules for Starting a Regional Student Group.

Avinash Kumar Shanmugam, Geoff MacIntyre, Magali Michaut, Thomas Abeel

PLoS Comput. Biol., 2013

The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov

PLoS Comput. Biol., 2013

The Regional Student Group Program of the ISCB Student Council: Stories from the Road.

Geoff MacIntyre, Magali Michaut, Thomas Abeel

PLoS Comput. Biol., 2013

ISCB Computational Biology Wikipedia Competition.

Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost

PLoS Comput. Biol., 2013

2012

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012.

Alexander Goncearenco, Priscila Grynberg, Olga B. Botvinnik, Geoff MacIntyre, Thomas Abeel

BMC Bioinform., 2012

2011

Highlights from the Student Council Symposium 2011 at the International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology.

Priscila Grynberg, Thomas Abeel, Pedro Lopes, Geoff MacIntyre, Lorena Pantano Rubiño

BMC Bioinform., 2011

Replication of epistatic DNA loci in two case-control GWAS studies using OPE algorithm.

Benjamin Goudey, Qiao Wang, Dave Rawlinson, Armita Zarnegar, Eder Kikianty, John Markham, Geoff MacIntyre, Gad Abraham, Linda Stern, Michael Inouye, Izhak Haviv, Adam Kowalczyk

BMC Bioinform., 2011

2010

Using Gene Ontology annotations in exploratory microarray clustering to understand cancer etiology.

Geoff MacIntyre, James Bailey, Daniel Gustafsson, Izhak Haviv, Adam Kowalczyk

Pattern Recognit. Lett., 2010

A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer.

Fan Shi, Christopher Leckie, Geoff MacIntyre, Izhak Haviv, Alex Boussioutas, Adam Kowalczyk

BMC Bioinform., 2010

is-rSNP: a novel technique for in silico regulatory SNP detection.

Geoff MacIntyre, James Bailey, Izhak Haviv, Adam Kowalczyk

BMC Bioinform., 2010

is-rSNP: a novel technique for <i>in silico</i> regulatory SNP detection.

Geoff MacIntyre, James Bailey, Izhak Haviv, Adam Kowalczyk

Bioinform., 2010

2009

A voting approach to identify a small number of highly predictive genes using multiple classifiers.

Md. Rafiul Hassan, M. Maruf Hossain, James Bailey, Geoff MacIntyre, Joshua Wing Kei Ho, Kotagiri Ramamohanarao

BMC Bioinform., 2009

2008

Gene Ontology Assisted Exploratory Microarray Clustering and Its Application to Cancer.

Geoff MacIntyre, James Bailey, Daniel Gustafsson, Alex Boussioutas, Izhak Haviv, Adam Kowalczyk

Proceedings of the Pattern Recognition in Bioinformatics, 2008