Gamze Gürsoy

According to our database, Gamze Gürsoy authored at least 19 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Privacy-preserving model evaluation for logistic and linear regression using homomorphically encrypted genotype data.

Seungwan Hong, Yoolim A. Choi, Daniel S. Joo, Gamze Gürsoy

J. Biomed. Informatics, 2024

A Universal Metric of Dataset Similarity for Cross-silo Federated Learning.

Ahmed Elhussein, Gamze Gürsoy

CoRR, 2024

Recent Advances, Applications, and Open Challenges in Machine Learning for Health: Reflections from Research Roundtables at ML4H 2023 Symposium.

Hyewon Jeong, Sarah Jabbour, Yuzhe Yang, Rahul Thapa, Hussein Mozannar, William Jongwon Han, Nikita Mehandru, Michael Wornow, Vladislav Lialin, Xin Liu, Alejandro Lozano, Jiacheng Zhu, Rafal Dariusz Kocielnik, Keith Harrigian, Haoran Zhang, Edward Lee, Milos Vukadinovic, Aparna Balagopalan, Vincent Jeanselme, Katherine Matton, Ilker Demirel, Jason A. Fries, Parisa Rashidi, Brett K. Beaulieu-Jones, Xuhai "Orson" Xu, Matthew B. A. McDermott, Tristan Naumann, Monica Agrawal, Marinka Zitnik, Berk Ustun, Edward Choi, Kristen Yeom, Gamze Gürsoy, Marzyeh Ghassemi, Emma Pierson, George H. Chen, Sanjat Kanjilal, Michael Oberst, Linying Zhang, Harvineet Singh, Tom Hartvigsen, Helen Zhou, Chinasa T. Okolo

CoRR, 2024

2023

LDmat: efficiently queryable compression of linkage disequilibrium matrices.

Rockwell J. Weiner, Chirag M. Lakhani, David A. Knowles, Gamze Gürsoy

Bioinform., February, 2023

Privacy-preserving patient clustering for personalized federated learning.

Ahmed Elhussein, Gamze Gürsoy

CoRR, 2023

Privacy-preserving patient clustering for personalized federated learnings.

Ahmed Elhussein, Gamze Gürsoy

Proceedings of the Machine Learning for Healthcare Conference, 2023

A generalizable physiological model for detection of Delayed Cerebral Ischemia using Federated Learning.

Ahmed Elhussein, Jude Savarraj, E. Sander Connolly, Murad Megjhani, Soon Bin Kwon, Angela Velazquez, Daniel Nametz, David J. Roh, Jan Claassen, Miriam Weiss, Sachin Agarwal, Huimahn A. Choi, Gerrit A. Schubert, Soojin Park, Gamze Gürsoy

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Scalable privacy-preserving cancer type prediction with homomorphic encryption.

Esha Sarkar, Eduardo Chielle, Gamze Gürsoy, Leo Chen, Mark Gerstein, Michail Maniatakos

CoRR, 2022

Privacy-preserving Model Training for Disease Prediction Using Federated Learning with Differential Privacy.

Amol Khanna, Vincent Schaffer, Gamze Gürsoy, Mark Gerstein

Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022

How to Achieve Privacy in Large Diverse Health Systems.

Gamze Gürsoy, Bradley A. Malin, Erman Ayday, Ellen Wright Clayton

Proceedings of the AMIA 2022, 2022

A consortium blockchain for secure, unified, and efficient sharing of EHR and genomics data.

Ahmed Elhussein, Gamze Gürsoy

Proceedings of the AMIA 2022, 2022

2021

FANCY: fast estimation of privacy risk in functional genomics data.

Gamze Gürsoy, Charlotte M. Brannon, Fabio C. P. Navarro, Mark Gerstein

Bioinform., 2021

Fast and Scalable Private Genotype Imputation Using Machine Learning and Partially Homomorphic Encryption.

Esha Sarkar, Eduardo Chielle, Gamze Gürsoy, Oleg Mazonka, Mark Gerstein, Michail Maniatakos

IEEE Access, 2021

2020

DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.

Jing Zhang, Jason Liu, Donghoon Lee, Shaoke Lou, Zhanlin Chen, Gamze Gürsoy, Mark Gerstein

BMC Bioinform., 2020

Navigating Ethical Quandaries with the Privacy Dilemma of Biomedical Datasets.

Gamze Gürsoy, Megan Doerr, John Wilbanks, Jennifer K. Wagner, Haixu Tang, Steven E. Brenner

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

Session Introduction.

Gamze Gürsoy, Arif Ozgun Harmanci, Haixu Tang, Erman Ayday, Steven E. Brenner

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2017

Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.

Gamze Gürsoy, Yun Xu, Jie Liang

PLoS Comput. Biol., 2017

2014

Computational predictions of structures of multichromosomes of budding yeast.

Gamze Gürsoy, Yun Xu, Jie Liang

Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

2011

A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks

Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag

CoRR, 2011