Frédérique Lisacek

According to our database, Frédérique Lisacek authored at least 31 papers between 1999 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.

Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder

Database J. Biol. Databases Curation, January, 2024

2023

Linking glycan and protein data.

Catherine A. Hayes, Vincenzo Daponte, Frédérique Lisacek

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Glycan Semantic Model Applications in Substructure Search.

Vincenzo Daponte, Catherine A. Hayes, Julien Mariethoz, Frédérique Lisacek

Proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2022

2021

Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.

Severine Duvaud, Chiara Gabella, Frédérique Lisacek, Heinz Stockinger, Vassilios Ioannidis, Christine Durinx

Nucleic Acids Res., 2021

LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification.

François Bonnardel, Julien Mariethoz, Serge Pérez, Anne Imberty, Frédérique Lisacek

Nucleic Acids Res., 2021

2020

Norine: update of the nonribosomal peptide resource.

Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, Juraj Michalik, Philippe Jacques, Christophe Flahaut, Frédérique Lisacek, Valérie Leclère, Maude Pupin

Nucleic Acids Res., 2020

2019

Proteome Informatics.

Frédérique Lisacek

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands.

François Bonnardel, Julien Mariethoz, Sebastian Salentin, Xavier Robin, Michael Schroeder, Serge Pérez, Frédérique Lisacek, Anne Imberty

Nucleic Acids Res., 2019

rBAN: retro-biosynthetic analysis of nonribosomal peptides.

Emma Ricart, Valérie Leclère, Areski Flissi, Markus Müller, Maude Pupin, Frédérique Lisacek

J. Cheminformatics, 2019

2016

SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Julien Mariethoz, Khaled Khatib, Davide Alocci, Matthew P. Campbell, Niclas G. Karlsson, Nicolle H. Packer, Elaine H. Mullen, Frédérique Lisacek

Nucleic Acids Res., 2016

2015

Glycan Pattern Search.

Davide Alocci, Julien Mariethoz, Frédérique Lisacek

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel

Nucleic Acids Res., 2014

UniCarbKB: building a knowledge platform for glycoproteomics.

Matthew P. Campbell, Robyn Peterson, Julien Mariethoz, Elisabeth Gasteiger, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Frédérique Lisacek, Nicolle H. Packer

Nucleic Acids Res., 2014

NETTAB 2012 on "Integrated Bio-Search".

Paolo Romano, Frédérique Lisacek, Marco Masseroli

BMC Bioinform., 2014

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.

Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano

BMC Bioinform., 2014

Toolboxes for a standardised and systematic study of glycans.

Matthew P. Campbell, René Ranzinger, Thomas Lütteke, Julien Mariethoz, Catherine A. Hayes, Jingyu Zhang, Yukie Akune, Kiyoko F. Aoki-Kinoshita, David Damerell, Giorgio Carta, William S. York, Stuart M. Haslam, Hisashi Narimatsu, Pauline M. Rudd, Niclas G. Karlsson, Nicolle H. Packer, Frédérique Lisacek

BMC Bioinform., 2014

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.

Lou Götz, Jodie L. Abrahams, Julien Mariethoz, Pauline M. Rudd, Niclas G. Karlsson, Nicolle H. Packer, Matthew P. Campbell, Frédérique Lisacek

Bioinform., 2014

2012

ConoDictor: a tool for prediction of conopeptide superfamilies.

Dominique Koua, Age Brauer, Silja Laht, Lauris Kaplinski, Philippe Favreau, Maido Remm, Frédérique Lisacek, Reto Stöcklin

Nucleic Acids Res., 2012

eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources.

Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011

pROC: an open-source package for R and S+ to analyze and compare ROC curves.

Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller

BMC Bioinform., 2011

UniCarb-DB: a database resource for glycomic discovery.

Catherine A. Hayes, Niclas G. Karlsson, Weston B. Struwe, Frédérique Lisacek, Pauline M. Rudd, Nicolle H. Packer, Matthew P. Campbell

Bioinform., 2011

2008

swissPIT: a novel approach for pipelined analysis of mass spectrometry data.

Andreas Quandt, Patricia Hernandez, Alexandre Masselot, Céline Hernandez, Sergio Maffioletti, Cesare Pautasso, Ron D. Appel, Frédérique Lisacek

Bioinform., 2008

2007

Extracting Sequential Nuggets of Knowledge.

Christine Froidevaux, Frédérique Lisacek, Bastien Rance

Proceedings of the Database and Expert Systems Applications, 18th International Conference, 2007

2006

Using argumentation to retrieve articles with similar citations: An inquiry into improving related articles search in the MEDLINE digital library.

Imad Tbahriti, Christine Chichester, Frédérique Lisacek, Patrick Ruch

Int. J. Medical Informatics, 2006

2005

Extracting Key Sentences with Latent Argumentative Structuring.

Patrick Ruch, Robert H. Baud, Christine Chichester, Antoine Geissbühler, Frédérique Lisacek, Johan Marty, Dietrich Rebholz-Schuhmann, Imad Tbahriti, Anne-Lise Veuthey

Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

2004

Using Argumentation to Retrieve Articles with Similar Citations from MEDLINE.

Imad Tbahriti, Christine Chichester, Frédérique Lisacek, Patrick Ruch

Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004

2003

Investigating protein domain combinations in complete proteomes.

Frédéric Nikitin, Frédérique Lisacek

Comput. Biol. Chem., 2003

Consistency checks for characterizing protein forms.

Christine Chichester, Frédéric Nikitin, Jean-Christophe Ravarini, Frédérique Lisacek

Comput. Biol. Chem., 2003

2002

Probabilistic alignment of motifs with sequences.

Pedro Gonnet, Frédérique Lisacek

Bioinform., 2002

2000

Algorithms on Strings, Trees and Sequences: Dan Gusfield.

Frédérique Lisacek

Comput. Chem., 2000

1999

A Multi-agent System Simulating Human Splice Site Recognition.

Laurence Vignal, Frédérique Lisacek, Joël Quinqueton, Yves D'Aubenton-Carafa, Claude Thermes

Comput. Chem., 1999