Frank J. Manion

According to our database, Frank J. Manion authored at least 33 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models.

Surabhi Datta, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang

J. Am. Medical Informatics Assoc., January, 2024

2023

Machine learning-based donor permission extraction from informed consent documents.

Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao

BMC Bioinform., December, 2023

2022

LANN: an Integrated Online Annotation Tool for Information Extraction.

Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

2021

COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model.

Jingqi Wang, Noor Abu-El-Rub, Josh Gray, Huy Anh Pham, Yujia Zhou, Frank J. Manion, Mei Liu, Xing Song, Hua Xu, Masoud Rouhizadeh, Yaoyun Zhang

J. Am. Medical Informatics Assoc., 2021

Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case.

Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

COVID-19 SignSym: A fast adaptation of general clinical NLP tools to identify and normalize COVID-19 signs and symptoms to OMOP common data model.

Jingqi Wang, Huy Anh Pham, Frank J. Manion, Masoud Rouhizadeh, Yaoyun Zhang

CoRR, 2020

2019

Architecture and usability of OntoKeeper, an ontology evaluation tool.

Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao

BMC Medical Informatics Decis. Mak., 2019

Using Stases to Enrich Queries for When and Where Regulations Are in Force.

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Frank J. Manion, Marcelline R. Harris, Cui Tao

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

Expanding the Representation of Permissions and Deontic Roles in the Informed Consent Ontology (ICO).

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Elizabeth Umberfield, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2019, 2019

Refactoring and Expanding the Informed Consent Ontology (ICO).

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2019, 2019

A Scoping Review to Identify Biobank Classification and Permissions to Share Metadata.

Marcelline R. Harris, Frank J. Manion, Madhuri Sankaranarayanapillai, Hsing-yi Song, Marisa Conte, Cui Tao

Proceedings of the AMIA 2019, 2019

2018

Coordinated Evolution of Ontologies of Informed Consent.

J. Neil Otte, Cooper Stansbury, Jonathan Vajda, Frank J. Manion, Elizabeth Umberfield, Yongqun He, Marcelline R. Harris, Jihad S. Obeid, Mathias Brochhausen, William D. Duncan, Cui Tao

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists.

Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Development and Validation of an Ontological Representation of the US Common Rule.

Frank J. Manion, Marcelline R. Harris, Muhamamd F. Amith, Cui Tao

Proceedings of the AMIA 2018, 2018

2017

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation.

Muhammad Amith, Frank J. Manion, Marcelline R. Harris, Yaoyun Zhang, Hua Xu, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Evaluation of the Surveillance, Epidemiology, and End Results Data Management System (SEER*DMS) to support the efforts in enhancing U.S cancer surveillance.

Marina Z. Matatova, Paul Fearn, Eric B. Durbin, Gary Levin, Frank J. Manion, Patrick Mergler

Proceedings of the AMIA 2017, 2017

From Scoping Review to Metadata: An Evidence-Based Approach to Identifying Informed Consent Metadata for Biorepositories.

Marcelline R. Harris, Frank J. Manion, Hsing-yi Song, Yongqun He, Muhamamd F. Amith, Cui Tao

Proceedings of the AMIA 2017, 2017

2016

A Research Capability Framework.

Airong Luo, Marcelline R. Harris, Frank J. Manion, Barbara Mirel

Proceedings of the AMIA 2016, 2016

2014

Development of a BFO-Based Informed Consent Ontology (ICO).

Yu Lin, Marcelline R. Harris, Frank J. Manion, Elizabeth Eisenhauer, Bin Zhao, Wei Shi, Alla Karnovsky, Yongqun He

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Analysis of Content Coverage for Informed Consent Concepts.

Frank J. Manion, Elizabeth Eisenhauer, Alla Karnovsky, Yongqun He, Yu Lin, Marcelline R. Harris

Proceedings of the AMIA 2014, 2014

2012

tranSMART Supports a Post-GWAS Data Coordinating Center.

Dan Stuart, John Harju, Wei Shi, David A. Hanauer, Dina Aronzon, Jinlei Liu, Raveen Sharma, Frank J. Manion, Haiping Xia, Carolyn Hutter, Stephen Gruber

Proceedings of the AMIA 2012, 2012

Development of an Informed Consent Ontology to Support Biobanking.

Alla Karnovsky, Frank J. Manion, Terry E. Weymouth, V. Glenn Tarcea, Lisa Powell, Blake Roessler, Nicholas Steneck

Proceedings of the AMIA 2012, 2012

Hedging their Mets: The Use of Uncertainty Terms in Clinical Documents and its Potential Implications when Sharing the Documents with Patients.

David A. Hanauer, Yang Liu, Qiaozhu Mei, Frank J. Manion, Ulysses J. Balis, Kai Zheng

Proceedings of the AMIA 2012, 2012

Extending OpenClinica using Web 2.0 Technologies.

Anjali Bhandari, Wei Shi, John Harju, Frank J. Manion, Becky Marshall, Andrew Chang, Rebecca M. Minter

Proceedings of the AMIA 2012, 2012

2010

Data visualization of teen birth rate data using freely available rapid prototyping tools.

Risa B. Myers, James W. Lomax III, Frank J. Manion, Nancy M. Wood, Todd R. Johnson

Proceedings of the ACM International Health Informatics Symposium, 2010

2009

Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study.

Frank J. Manion, Robert J. Robbins, William A. Weems, Rebecca S. Crowley

BMC Medical Informatics Decis. Mak., 2009

Integration of prostate cancer clinical data using an ontology.

Hua Min, Frank J. Manion, Elizabeth Goralczyk, Yu-Ning Wong, Eric A. Ross, J. Robert Beck

J. Biomed. Informatics, 2009

FuGEFlow: data model and markup language for flow cytometry.

Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman

BMC Bioinform., 2009

2006

WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis.

Ghislain Bidaut, Frank J. Manion, Christophe Garcia, Michael F. Ochs

J. Biomed. Informatics, 2006

2004

FGDP: functional genomics data pipeline for automated, multiple microarray data analyses.

Jeffrey D. Grant, Luke A. Somers, Yue Zhang, Frank J. Manion, Ghislain Bidaut, Michael F. Ochs

Bioinform., 2004

2003

ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.

Andrew V. Kossenkov, Frank J. Manion, Eugene V. Korotkov, Thomas D. Moloshok, Michael F. Ochs

Bioinform., 2003

2002

Application of Bayesian Decomposition for analysing microarray data.

Thomas D. Moloshok, R. R. Klevecz, Jeffrey D. Grant, Frank J. Manion, W. F. Speier IV, Michael F. Ochs

Bioinform., 2002

BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.

Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs

Bioinform., 2002