Frank J. Bruggeman

According to our database, Frank J. Bruggeman authored at least 15 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Whole-cell metabolic control analysis.

Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff

Biosyst., December, 2023

Is distance from equilibrium a good indicator for a reaction's flux control?

David D. van Niekerk, Erik Rust, Frank J. Bruggeman, Hans V. Westerhoff, Jacky L. Snoep

Biosyst., October, 2023

2021

Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic Networks.

Tom J. Clement, Erik B. Baalhuis, Bas Teusink, Frank J. Bruggeman, Robert Planqué, Daan H. de Groot

Patterns, 2021

2020

Elementary Growth Modes provide a molecular description of cellular self-fabrication.

Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué

PLoS Comput. Biol., 2020

The Fundamental Equations of Change in Statistical Ensembles and Biological Populations.

Steven A. Frank, Frank J. Bruggeman

Entropy, 2020

2019

The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates.

Daan H. de Groot, Coco van Boxtel, Robert Planqué, Frank J. Bruggeman, Bas Teusink

PLoS Comput. Biol., 2019

2018

Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield.

Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister

PLoS Comput. Biol., 2018

Maintaining maximal metabolic flux by gene expression control.

Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman

PLoS Comput. Biol., 2018

2015

Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism.

Katja N. Rybakova, Frank J. Bruggeman, Aleksandra Tomaszewska, Martijn J. Moné, Carsten Carlberg, Hans V. Westerhoff

PLoS Comput. Biol., 2015

Interplay between Constraints, Objectives, and Optimality for Genome-Scale Stoichiometric Models.

Timo R. Maarleveld, Meike T. Wortel, Brett G. Olivier, Bas Teusink, Frank J. Bruggeman

PLoS Comput. Biol., 2015

Fast Flux Module Detection Using Matroid Theory.

Arne C. Reimers, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie

J. Comput. Biol., 2015

2011

ITFoM - The IT Future of Medicine.

Hans Lehrach, Ralf Sudbrak, Peter Boyle, Markus Pasterk, Kurt Zatloukal, Heimo Müller, Tim Hubbard, Angela Brand, Mark A. Girolami, Daniel Jameson, Frank J. Bruggeman, Hans V. Westerhoff

Proceedings of the 2nd European Future Technologies Conference and Exhibition, 2011

Formal Methods in Molecular Biology (Dagstuhl Seminar 11151).

Rainer Breitling, Frank J. Bruggeman, Corrado Priami, Adelinde M. Uhrmacher

Dagstuhl Reports, 2011

2009

Noise Management by Molecular Networks.

Frank J. Bruggeman, Nils Blüthgen, Hans V. Westerhoff

PLoS Comput. Biol., 2009

2005

Emergence and Its Place in Nature: A Case Study of Biochemical Networks.

Fred C. Boogerd, Frank J. Bruggeman, Robert C. Richardson, A. Stephan, Hans V. Westerhoff

Synth., 2005