Francisco J. Planes

Orcid: 0000-0003-1155-3105

According to our database1, Francisco J. Planes authored at least 23 papers between 2007 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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Links

On csauthors.net:

Bibliography

2024
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism.
Briefings Bioinform., 2024

2022
BOSO: A novel feature selection algorithm for linear regression with high-dimensional data.
PLoS Comput. Biol., 2022

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism.
PLoS Comput. Biol., 2022

2020
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models.
Bioinform., 2020

2019
rMTA: robust metabolic transformation analysis.
Bioinform., 2019

gMCS: fast computation of genetic minimal cut sets in large networks.
Bioinform., 2019

2016
Direct calculation of minimal cut sets involving a specific reaction knock-out.
Bioinform., 2016

2015
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.
Bioinform., 2015

TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm.
Bioinform., 2015

Advances in network-based metabolic pathway analysis and gene expression data integration.
Briefings Bioinform., 2015

2014
Refining carbon flux paths using atomic trace data.
Bioinform., 2014

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.
Bioinform., 2014

2013
Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways.
BMC Syst. Biol., 2013

A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype.
BMC Syst. Biol., 2013

Selection of human tissue-specific elementary flux modes using gene expression data.
Bioinform., 2013

Joint analysis of miRNA and mRNA expression data.
Briefings Bioinform., 2013

2011
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes.
Biosyst., 2011

Exploring metabolic pathways in genome-scale networks via generating flux modes.
Bioinform., 2011

2009
Path finding approaches and metabolic pathways.
Discret. Appl. Math., 2009

An optimization model for metabolic pathways.
Bioinform., 2009

Computing the shortest elementary flux modes in genome-scale metabolic networks.
Bioinform., 2009

2008
A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
Briefings Bioinform., 2008

2007
Recovering metabolic pathways via optimization.
Bioinform., 2007


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