Francesca Cordero

According to our database, Francesca Cordero authored at least 45 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

A new computational workflow to guide personalized drug therapy.

Simone Pernice, Alessandro Maglione, Dora Tortarolo, Roberta Sirovich, Marinella Clerico, Simona Rolla, Marco Beccuti, Francesca Cordero

J. Biomed. Informatics, December, 2023

CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system.

Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero

Bioinform., May, 2023

Artificial intelligence methods for biomedical imaging and omics data.

Carlo Alberto Barbano, Marco Beccuti, Francesca Cordero, Desislav Nikolaev Ivanov, Nicola Licheri, Simone Pernice, Alberto Presta, Riccardo Renzulli, Marco Grangetto

Proceedings of the Italia Intelligenza Artificiale, 2023

OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data.

Dora Tortarolo, Simone Pernice, Fabiana Clapero, Donatella Valdembri, Guido Serini, Federica Riccardo, Lidia Tarone, Chiara Enrico Bena, Carla Bosia, Sandro Gepiro Contaldo, Marco Beccuti, Marzio Pennisi, Francesca Cordero

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2021

Interpretable Deep Model For Predicting Gene-Addicted Non-Small-Cell Lung Cancer In Ct Scans.

Carmelo Pino, Simone Palazzo, Francesca Trenta, Francesca Cordero, Ulas Bagci, Francesco Rundo, Sebastiano Battiato, Daniela Giordano, Marco Aldinucci, Concetto Spampinato

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020

Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.

Simone Pernice, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccoló Totis, Pietro Lió, Ivan Merelli, Francesca Cordero, Marco Beccuti

Fundam. Informaticae, 2020

Computational modeling of the immune response in multiple sclerosis using epimod framework.

Simone Pernice, Laura Follia, Alessandro Maglione, Marzio Pennisi, Francesco Pappalardo, Francesco Novelli, Marinella Clerico, Marco Beccuti, Francesca Cordero, Simona Rolla

BMC Bioinform., 2020

2019

A computational approach based on the colored Petri net formalism for studying multiple sclerosis.

Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero

BMC Bioinform., December, 2019

BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics.

Francesca Cordero, Raffaele A. Calogero, Michele Caselle

BMC Bioinform., 2019

Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions.

Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.

Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero

BMC Bioinform., 2018

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Marco Beccuti, Francesca Cordero, Maddalena Arigoni, Riccardo Panero, Elvio Gilberto Amparore, Susanna Donatelli, Raffaele A. Calogero

Bioinform., 2018

2017

Overcoming the lack of kinetic information in biochemical reactions networks.

Niccoló Totis, Laura Follia, Chiara Riganti, Francesco Novelli, Francesca Cordero, Marco Beccuti

SIGMETRICS Perform. Evaluation Rev., 2017

HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data.

Marco Beccuti, Elisa Genuardi, Greta Romano, Luigia Monitillo, Daniela Barbero, Mario Boccadoro, Marco Ladetto, Raffaele A. Calogero, Simone Ferrero, Francesca Cordero

BMC Bioinform., 2017

A mathematical model to study breast cancer growth.

Giorgia Chivassa, Chiara Fornari, Roberta Sirovich, Marzio Pennisi, Marco Beccuti, Francesca Cordero

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology.

Paolo Romano, Francesca Cordero

BMC Bioinform., 2016

Erratum to: 'NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology'.

Paolo Romano, Francesca Cordero

BMC Bioinform., 2016

Dealing with indetermination in biochemical networks.

Niccoló Totis, Marco Beccuti, Francesca Cordero, Laura Follia, Chiara Riganti, Francesco Novelli

Proceedings of the 10th EAI International Conference on Performance Evaluation Methodologies and Tools, 2016

2015

A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression.

Chiara Fornari, Gianfranco Balbo, Sami M. Halawani, Omar M. Ba-Rukab, Ab Rahman Ahmad, Raffaele A. Calogero, Francesca Cordero, Marco Beccuti

BMC Syst. Biol., 2015

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

Matteo Carrara, Josephine Lum, Francesca Cordero, Marco Beccuti, Michael Poidinger, Susanna Donatelli, Raffaele A. Calogero, Francesca Zolezzi

BMC Bioinform., 2015

Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads.

Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi

Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014

Leveraging additional knowledge to support coherent bicluster discovery in gene expression data.

Alessia Visconti, Francesca Cordero, Ruggero G. Pensa

Intell. Data Anal., 2014

Chimera: a Bioconductor package for secondary analysis of fusion products.

Marco Beccuti, Matteo Carrara, Francesca Cordero, Fulvio Lazzarato, Susanna Donatelli, Francesca Nadalin, Alberto Policriti, Raffaele A. Calogero

Bioinform., 2014

Markovian Agents Population Models to Study Cancer Evolution.

Francesca Cordero, Chiara Fornari, Marco Gribaudo, Daniele Manini

Proceedings of the Analytical and Stochastic Modelling Techniques and Applications, 2014

2013

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space.

Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close

PLoS Comput. Biol., 2013

Guest Editorial.

Ruggero G. Pensa, Francesca Cordero, Céline Rouveirol, Rushed Kanawati

Intell. Data Anal., 2013

Multi-level model for the investigation of oncoantigen-driven vaccination effect.

Francesca Cordero, Marco Beccuti, Chiara Fornari, Stefania Lanzardo, Laura Conti, Federica Cavallo, Gianfranco Balbo, Raffaele A. Calogero

BMC Bioinform., 2013

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Matteo Carrara, Marco Beccuti, Federica Cavallo, Susanna Donatelli, Fulvio Lazzarato, Francesca Cordero, Raffaele A. Calogero

BMC Bioinform., 2013

2011

A Modular Database Architecture Enabled to Comparative Sequence Analysis.

Paola Bonfante, Francesca Cordero, Stefano Ghignone, Dino Ienco, Luisa Lanfranco, Giorgio Leonardi, Rosa Meo, Stefania Montani, Luca Roversi, Alessia Visconti

Trans. Large Scale Data Knowl. Centered Syst., 2011

Simplification of a complex signal transduction model using invariants and flow equivalent servers.

Francesca Cordero, András Horváth, Daniele Manini, Lucia Napione, Massimiliano De Pierro, Simona Pavan, Andrea Picco, Andrea Veglio, Matteo Sereno, Federico Bussolino, Gianfranco Balbo

Theor. Comput. Sci., 2011

Restructuring the Gene Ontology to emphasise regulative pathways and to improve gene similarity queries.

Alessia Visconti, Roberto Esposito, Francesca Cordero

Int. J. Comput. Biol. Drug Des., 2011

Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models.

Chiara Fornari, Francesca Cordero, Daniele Manini, Gianfranco Balbo, Raffaele A. Calogero

Proceedings of the Second International Workshop on Interactions between Computer Science and Biology, 2011

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space

Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close

CoRR, 2011

Cancer stem cell based adjuvant for oncoantingen-driven vaccination.

Francesca Cordero, Stefania Lanzardo, Maddalena Arigoni, Chiara Fornari, Laura Conti, Gianfranco Balbo, Federica Cavallo, Daniele Manini, Raffaele A. Calogero

Proceedings of the ACM International Conference on Bioinformatics, 2011

Tackling the DREAM Challenge for Gene Regulatory Networks Reverse Engineering.

Alessia Visconti, Roberto Esposito, Francesca Cordero

Proceedings of the AI*IA 2011: Artificial Intelligence Around Man and Beyond, 2011

2010

Co-clustering numerical data under user-defined constraints.

Ruggero G. Pensa, Jean-François Boulicaut, Francesca Cordero, Maurizio Atzori

Stat. Anal. Data Min., 2010

Gene Ontology Rewritten for Computing Gene Functional Similarity.

Alessia Visconti, Francesca Cordero, Marco Botta, Raffaele A. Calogero

Proceedings of the CISIS 2010, 2010

Comparison of Approximate Kinetics for Unireactant Enzymes: Michaelis-Menten against the Equivalent Server.

Alessio Angius, Gianfranco Balbo, Francesca Cordero, András Horváth, Daniele Manini

Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

2009

A new protein motif extraction framework based on constrained co-clustering.

Francesca Cordero, Alessia Visconti, Marco Botta

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process.

Lucia Napione, Daniele Manini, Francesca Cordero, András Horváth, Andrea Picco, Massimiliano De Pierro, Simona Pavan, Matteo Sereno, Andrea Veglio, Federico Bussolino, Gianfranco Balbo

Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS).

Silvia C. Lenzken, Silvia Vivarelli, Francesca Zolezzi, Francesca Cordero, Cristina Della Beffa, Raffaele A. Calogero, Silvia Barabino

Proceedings of the 2009 International Conference on Complex, 2009

Ontology-Driven Co-clustering of Gene Expression Data.

Francesca Cordero, Ruggero G. Pensa, Alessia Visconti, Dino Ienco, Marco Botta

Proceedings of the AI*IA 2009: Emergent Perspectives in Artificial Intelligence, 2009

2007

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Remo Sanges, Francesca Cordero, Raffaele A. Calogero

Bioinform., 2007

2005

An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention.

Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pierluigi Lollini, Guido Forni, Raffaele A. Calogero

BMC Bioinform., 2005

2004

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets.

Fulvio Lazzarato, Giuliana Franceschinis, Marco Botta, Francesca Cordero, Raffaele A. Calogero

Bioinform., 2004