Florian Borchert

According to our database, Florian Borchert authored at least 19 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Electronic Health Records-based identification of newly diagnosed Crohn's Disease cases.

Susanne Ibing, Julian Hugo, Florian Borchert, Linea Schmidt, Caroline Benson, Allison A. Marshall, Colleen Chasteau, Ujunwa Korie, Diana Paguay, Jan-Philipp Sachs, Bernhard Y. Renard, Judy H. Cho, Erwin P. Böttinger, Ryan C. Ungaro

Artif. Intell. Medicine, 2025

2024

medBERT.de: A comprehensive German BERT model for the medical domain.

Keno K. Bressem, Jens-Michalis Papaioannou, Paul Grundmann, Florian Borchert, Lisa C. Adams, Leonhard Liu, Felix Busch, Lina Xu, Jan P. Loyen, Stefan Markus Niehues, Moritz Augustin, Lennart Grosser, Marcus R. Makowski, Hugo J. W. L. Aerts, Alexander Löser

Expert Syst. Appl., March, 2024

Improving biomedical entity linking for complex entity mentions with LLM-based text simplification.

Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow

Database J. Biol. Databases Curation, January, 2024

2023

Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards.

Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils

SN Comput. Sci., July, 2023

Programming techniques for improving rule readability for rule-based information extraction natural language processing pipelines of unstructured and semi-structured medical texts.

Nektarios Ladas, Florian Borchert, Stefan Franz, Alina Rehberg, Natalia Strauch, Kim Katrin Sommer, Michael Marschollek, Matthias Gietzelt

Health Informatics J., April, 2023

Understanding emotions in the context of IT-based self-monitoring.

Danielly F. O. de Paula, Florian Borchert, Ariane Sasso, Falk Uebernickel

CoRR, 2023

xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization.

Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow

CoRR, 2023

Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking.

Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow

Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023

Resolving Elliptical Compounds in German Medical Text.

Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow

Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text.

Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow

Proceedings of the Artificial Intelligence in Medicine, 2023

Machine Learning Based Prediction of Incident Cases of Crohn's Disease Using Electronic Health Records from a Large Integrated Health System.

Julian Hugo, Susanne Ibing, Florian Borchert, Jan-Philipp Sachs, Judy Cho, Ryan C. Ungaro, Erwin P. Böttinger

Proceedings of the Artificial Intelligence in Medicine, 2023

A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation.

Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow

Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022

GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers.

Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow

Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval.

Florian Borchert, Matthieu-P. Schapranow

Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

2021

Knowledge bases and software support for variant interpretation in precision oncology.

Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow

Briefings Bioinform., 2021

An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software.

Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow

Proceedings of the ICT for Health, Accessibility and Wellbeing, 2021

A Comparison of Concept Embeddings for German Clinical Corpora.

Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence.

Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines.

Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow

Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020