Florencio Pazos

Juan Antonio Garcia-Ranea

Database J. Biol. Databases Curation, January, 2024

2023

MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.

[BibT_eX]

[DOI]

Nucleic Acids Res., July, 2023

2021

Predicting biological pathways of chemical compounds with a profile-inspired approach.

[BibT_eX]

[DOI]

BMC Bioinform., 2021

Protein residues determining interaction specificity in paralogous families.

[BibT_eX]

[DOI]

Borja Pitarch

Juan A. G. Ranea

Bioinform., 2021

2019

Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms.

[BibT_eX]

[DOI]

Bioinform., 2019

Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.

[BibT_eX]

[DOI]

Briefings Bioinform., 2019

2018

Effect of the sequence data deluge on the performance of methods for detecting protein functional residues.

[BibT_eX]

[DOI]

Diego Garrido-Martín

BMC Bioinform., 2018

2017

Factors affecting interactome-based prediction of human genes associated with clinical signs.

[BibT_eX]

[DOI]

Sara González-Pérez

BMC Bioinform., 2017

2016

Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2016

MBROLE 2.0 - functional enrichment of chemical compounds.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2016

Characterization of clinical signs in the human interactome.

[BibT_eX]

[DOI]

Bioinform., 2016

Practical analysis of specificity-determining residues in protein families.

[BibT_eX]

[DOI]

Juan A. García-Martín

Briefings Bioinform., 2016

2015

Detection of significant protein coevolution.

[BibT_eX]

[DOI]

Bioinform., 2015

2013

Concomitant prediction of function and fold at the domain level with GO-based profiles.

[BibT_eX]

[DOI]

Daniel Lopez

BMC Bioinform., 2013

COPRED: prediction of fold, GO molecular function and functional residues at the domain level.

[BibT_eX]

[DOI]

Daniel Lopez

Bioinform., 2013

Tools for the functional interpretation of metabolomic experiments.

[BibT_eX]

[DOI]

Briefings Bioinform., 2013

2012

Computational Prediction of Important Regions in Protein Sequences [Life Sciences].

[BibT_eX]

[DOI]

IEEE Signal Process. Mag., 2012

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.

[BibT_eX]

[DOI]

Thilo Muth

Juan A. García-Martín

Bioinform., 2012

2011

Selection of organisms for the co-evolution-based study of protein interactions.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

MBRole: enrichment analysis of metabolomic data.

[BibT_eX]

[DOI]

Bioinform., 2011

2010

Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds.

[BibT_eX]

[DOI]

Juan C. Triviño

BMC Syst. Biol., 2010

Studying the co-evolution of protein families with the Mirrortree web server.

[BibT_eX]

[DOI]

David Ochoa

Bioinform., 2010

Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data.

[BibT_eX]

[DOI]

Bioinform., 2010

2008

Defining functional distances over Gene Ontology.

[BibT_eX]

[DOI]

Angela del Pozo

BMC Bioinform., 2008

Enhancing the prediction of protein pairings between interacting families using orthology information.

[BibT_eX]

[DOI]

José M. G. Izarzugaza

BMC Bioinform., 2008

Computational Methods to Predict Protein Interaction Partners.

[BibT_eX]

[DOI]

Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2006

TSEMA: interactive prediction of protein pairings between interacting families.

[BibT_eX]

[DOI]

José M. G. Izarzugaza

Nucleic Acids Res., 2006

TreeDet: a web server to explore sequence space.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2006

Phylogeny-independent detection of functional residues.

[BibT_eX]

[DOI]

Antonio Rausell

Bioinform., 2006

2005

Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.

[BibT_eX]

[DOI]

Trans. Comp. Sys. Biology, 2005

MetaRouter: bioinformatics for bioremediation.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

EVAcon: a protein contact prediction evaluation service.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

2004

Modelling Inhibition in Metabolic Pathways Through Abduction and Induction.

[BibT_eX]

[DOI]

Alireza Tamaddoni-Nezhad

Antonis C. Kakas

Stephen H. Muggleton

Proceedings of the Inductive Logic Programming, 14th International Conference, 2004

The Biodegradation Network, a New Scenario for Computational Systems Biology Research.

[BibT_eX]

[DOI]

Proceedings of the Computational Methods in Systems Biology, International Conference, 2004

2003

EVA: evaluation of protein structure prediction servers.

[BibT_eX]

[DOI]

Mallur S. Madhusudhan

Nucleic Acids Res., 2003

2001

EVA: continuous automatic evaluation of protein structure prediction servers.

[BibT_eX]

[DOI]

Volker A. Eyrich

Marc A. Martí-Renom

Dariusz Przybylski

Mallur S. Madhusudhan

Bioinform., 2001

1999

A platform for integrating threading results with protein family analyses.

[BibT_eX]

[DOI]

Burkhard Rost

Bioinform., 1999

1997

A graphical interface for correlated mutations and other protein structure prediction methods.

[BibT_eX]

O. Olmea

Comput. Appl. Biosci., 1997

Comparative Analysis of Different Methods for the Detection of Specificity Regions in Protein Families.

[BibT_eX]

Juan Antonio Garcia-Ranca

Luis Sánchez-Pulido

Miguel A. Andrade

Silvia Atrian