Filippo Castiglione

Orcid: 0000-0002-1442-3552

Affiliations:
  • National Research Council of Italy, Rome, Italy


According to our database1, Filippo Castiglione authored at least 64 papers between 1997 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
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PhD thesis 
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Links

Online presence:

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Bibliography

2024
Toward mechanistic medical digital twins: some use cases in immunology.
Frontiers Digit. Health, 2024

MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor.
CoRR, 2024

Predicting Antimicrobial Resistance Trends Combining Standard Linear Algebra with Machine Learning Algorithms.
Balt. J. Mod. Comput., 2024

VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction.
Briefings Bioinform., 2024

2023
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis.
Comput. Biol. Medicine, September, 2023

Explainable Drug Repurposing Approach From Biased Random Walks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

An agent-based multi-level model to study the spread of gonorrhea in different and interacting risk groups.
Frontiers Appl. Math. Stat., 2023

Harnessing computational models to uncover the role of the immune system in tuberculosis treatment.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
A PCA-based Data Prediction Method.
Balt. J. Mod. Comput., 2022

An agent-based multi-level model to study the spread of antimicrobial-resistant gonorrhoea.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Emulating complex simulations by machine learning methods.
BMC Bioinform., 2021

Deep learning in systems medicine.
Briefings Bioinform., 2021

A functional data analysis approach to assess the prognostic value of SARS-CoV-2 infections surrogate data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

A data-driven model for the generation of Virtual Cohorts.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices.
BMC Bioinform., 2020

Emulation of dynamic multi-output simulator of risk of type-2 diabetes.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Network Inference and Reconstruction in Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Quantitative Modelling Approaches.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes.
Comput. Math. Methods Medicine, 2019

Game of neutrophils: modeling the balance between apoptosis and necrosis.
BMC Bioinform., 2019

Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.
Briefings Bioinform., 2019

Critical nodes reveal peculiar features of human essential genes and protein interactome.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Personalizing physical exercise in a computational model of fuel homeostasis.
PLoS Comput. Biol., 2018

A mathematical model of murine macrophage infected with Leishmania sp.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Evolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A mathematical model of Chagas disease infection predicts inhibition of the immune system.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Computational modeling of immune system of the fish for a more effective vaccination in aquaculture.
Bioinform., 2017

Computing Hierarchical Transition Graphs of Asynchronous Genetic Regulatory Networks.
Proceedings of the Artificial Life and Evolutionary Computation - 12th Italian Workshop, 2017

In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Statistical ensemble of gene regulatory networks of macrophage differentiation.
BMC Bioinform., 2016

Multiscale modelling in immunology: a review.
Briefings Bioinform., 2016

2015
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells.
BMC Syst. Biol., 2015

2014
Multi-scale Simulation of T Helper Lymphocyte Differentiation.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2014

Characterisation of the Idiotypic Immune Network Through Persistent Entropy.
Proceedings of the 2014 European Conference on Complex Systems, 2014

2013
VaccImm: simulating peptide vaccination in cancer therapy.
BMC Bioinform., 2013

Computational Biology Modeling across Different Scales.
Proceedings of the SIMULTECH 2013, 2013

2012
Time-Course Analysis of Main Markers of Primary Infection in Cats with the Feline Immunodeficiency Virus.
Comput. Math. Methods Medicine, 2012

How the Interval between Prime and Boost Injection Affects the Immune Response in a Computational Model of the Immune System.
Comput. Math. Methods Medicine, 2012

2011
Immune system simulation online.
Bioinform., 2011

2010
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation.
PLoS Comput. Biol., 2010

2009
Agent Based Modeling and Simulation, Introduction to.
Proceedings of the Encyclopedia of Complexity and Systems Science, 2009

Modeling lymphocyte homing and encounters in lymph nodes.
BMC Bioinform., 2009

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings Bioinform., 2009

Toward Multi-organs Simulations of Immune-Pathogen Interactions.
Proceedings of the Ninth International Conference on Intelligent Systems Design and Applications, 2009

2008
Comments on "Optimization and parallelization strategies for Monte Carlo simulation of HIV infection" by D. Hecquet, H.J. Ruskin and M. Crane Computers in Biology and Medicine, volume 37, 691, 2007.
Comput. Biol. Medicine, 2008

Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions.
Bioinform., 2008

A Discrete/Continuous Model of Anti-HIV Response and Therapy.
Proceedings of the 10th EUROS/UKSim International Conference on Computer Modelling and Simulation, 2008

2007
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics.
BMC Bioinform., 2007

Optimization of HAART with genetic algorithms and agent-based models of HIV infection.
Bioinform., 2007

Simulating Epstein-Barr virus infection with C-ImmSim.
Bioinform., 2007

2006
Agent based modeling.
Scholarpedia, 2006

2005
Simulating the G-protein cAMP pathway with a two-compartment reactive lattice gas.
Theory Biosci., 2005

OpenMP parallelization of agent-based models.
Parallel Comput., 2005

Modeling and simulation of cancer immunoprevention vaccine.
Bioinform., 2005

2004
Computational modeling of the immune response to tumor antigens: implications for vaccination.
Proceedings of the 43rd IEEE Conference on Decision and Control, 2004

Optimal control in a model of dendritic cell transfection cancer immunotherapy.
Proceedings of the 43rd IEEE Conference on Decision and Control, 2004

2001
Microsimulation of complex system dynamics: automata models in biology and finance.
PhD thesis, 2001

Pattern recognition by primary and secondary response of an Artificial Immune System.
Theory Biosci., 2001

Design and implementation of an immune system simulator.
Comput. Biol. Medicine, 2001

Forecasting Price increments using an Artificial Neural Network.
Adv. Complex Syst., 2001

2000
Estimating the Keratoconus Index from Ultrasound Images of the Human Cornea.
IEEE Trans. Medical Imaging, 2000

1999
A high performance simulator of the immune response.
Future Gener. Comput. Syst., 1999

1998
A Parallel Simulator of the Immune Response.
Proceedings of the High-Performance Computing and Networking, 1998

1997
A parallel algorithm for the simulation of the Immune Response.
Proceedings of the Workshop on Algorithm Engineering, 1997


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