Ferhat Ay

According to our database, Ferhat Ay authored at least 13 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing.

Ali Osman Berk Sapci, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Tastan, Sündüz Keles

Bioinform., October, 2023

2021

ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs.

Abhijit Chakraborty, Ferhat Ay, Ramana V. Davuluri

Bioinform., 2021

2019

Selfish: discovery of differential chromatin interactions via a self-similarity measure.

Abbas Roayaei Ardakany, Ferhat Ay, Stefano Lonardi

Bioinform., 2019

2018

Identification of copy number variations and translocations in cancer cells from Hi-C data.

Abhijit Chakraborty, Ferhat Ay

Bioinform., 2018

2014

A statistical approach for inferring the 3D structure of the genome.

Nelle Varoquaux, Ferhat Ay, William Stafford Noble, Jean-Philippe Vert

Bioinform., 2014

2012

Metabolic network alignment in large scale by network compression.

Ferhat Ay, Michael Dang, Tamer Kahveci

BMC Bioinform., 2012

2011

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings.

Ferhat Ay, Manolis Kellis, Tamer Kahveci

J. Comput. Biol., 2011

A novel framework for large scale metabolic network alignments by compression.

Michael Dang, Ferhat Ay, Tamer Kahveci

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings.

Ferhat Ay, Tamer Kahveci

Proceedings of the Research in Computational Molecular Biology, 2010

Finding steady states of large scale regulatory networks through partitioning.

Ferhat Ay, Günhan Gülsoy, Tamer Kahveci

Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

Finding Dynamic Modules of Biological Regulatory Networks.

Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahveci

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Functional similarities of reaction sets in metabolic pathways.

Ferhat Ay, Tamer Kahveci

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

A Fast and Accurate Algorithm for Comparative Analysis of metabolic Pathways.

Ferhat Ay, Tamer Kahveci, Valérie de Crécy-Lagard

J. Bioinform. Comput. Biol., 2009