Fengfeng Zhou

Orcid: 0000-0002-8108-6007

According to our database1, Fengfeng Zhou authored at least 71 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
FairCare: Adversarial training of a heterogeneous graph neural network with attention mechanism to learn fair representations of electronic health records.
Inf. Process. Manag., March, 2024

TemporalPaD: a reinforcement-learning framework for temporal feature representation and dimension reduction.
CoRR, 2024

MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis.
CoRR, 2024

AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides.
CoRR, 2024

PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding.
CoRR, 2024

MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning.
Bioinform., 2024

2023
Multi-view progression diagnosis of thyroid cancer by integrating platelet transcriptomes and blood routine tests.
Comput. Biol. Medicine, December, 2023

GSRNet, an adversarial training-based deep framework with multi-scale CNN and BiGRU for predicting genomic signals and regions.
Expert Syst. Appl., November, 2023

OCMR: A comprehensive framework for optical chemical molecular recognition.
Comput. Biol. Medicine, September, 2023

INS-GNN: Improving graph imbalance learning with self-supervision.
Inf. Sci., August, 2023

Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis.
Briefings Bioinform., July, 2023

EvaGoNet: An integrated network of variational autoencoder and Wasserstein generative adversarial network with gradient penalty for binary classification tasks.
Inf. Sci., June, 2023

EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species.
Comput. Biol. Medicine, June, 2023

Gender-specific dysregulations of nondifferentially expressed biomarkers of metastatic colon cancer.
Comput. Biol. Chem., June, 2023

An finite element analysis surrogate model with boundary oriented graph embedding approach for rapid design.
J. Comput. Des. Eng., April, 2023

FMGNN: A Method to Predict Compound-Protein Interaction With Pharmacophore Features and Physicochemical Properties of Amino Acids.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids.
CoRR, 2023

2022
Superpixel-Level Global and Local Similarity Graph-Based Clustering for Large Hyperspectral Images.
IEEE Trans. Geosci. Remote. Sens., 2022

Transforming OMIC features for classification using siamese convolutional networks.
J. Bioinform. Comput. Biol., 2022

Pan-cancer identification of the relationship of metabolism-related differentially expressed transcription regulation with non-differentially expressed target genes via a gated recurrent unit network.
Comput. Biol. Medicine, 2022

HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction.
Briefings Bioinform., 2022

2021
Spectral-Spatial Genetic Algorithm-Based Unsupervised Band Selection for Hyperspectral Image Classification.
IEEE Trans. Geosci. Remote. Sens., 2021

Finding branched pathways in metabolic network via atom group tracking.
PLoS Comput. Biol., 2021

Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties".
J. Chem. Inf. Model., 2021

XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties.
J. Chem. Inf. Model., 2021

Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data.
J. Bioinform. Comput. Biol., 2021

An FEA surrogate model with Boundary Oriented Graph Embedding approach.
CoRR, 2021

RIFS2D: A two-dimensional version of a randomly restarted incremental feature selection algorithm with an application for detecting low-ranked biomarkers.
Comput. Biol. Medicine, 2021

Computational pan-cancer characterization of model-based quantitative transcription regulations dysregulated in regional lymph node metastasis.
Comput. Biol. Medicine, 2021

A dynamic recursive feature elimination framework (dRFE) to further refine a set of OMIC biomarkers.
Bioinform., 2021

Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV.
Briefings Bioinform., 2021

A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear.
Briefings Bioinform., 2021

Survival Time Prediction of Breast Cancer Patients Using Feature Selection Algorithm Crystall.
IEEE Access, 2021

2020
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Selection of features for patient-independent detection of seizure events using scalp EEG signals.
Comput. Biol. Medicine, 2020

FeSTwo, a two-step feature selection algorithm based on feature engineering and sampling for the chronological age regression problem.
Comput. Biol. Medicine, 2020

sefOri: selecting the best-engineered sequence features to predict DNA replication origins.
Bioinform., 2020

Feature selection may improve deep neural networks for the bioinformatics problems.
Bioinform., 2020

ELMO: An Efficient Logistic Regression-Based Multi-Omic Integrated Analysis Method for Breast Cancer Intrinsic Subtypes.
IEEE Access, 2020

MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI.
IEEE Access, 2020

Heuristic Black-Box Adversarial Attacks on Video Recognition Models.
Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019
Accurate Fatigue Detection Based on Multiple Facial Morphological Features.
J. Sensors, 2019

Integrating Five Feature Types Extracted From Ultrasonograms to Improve the Prediction of Thyroid Papillary Carcinoma.
IEEE Access, 2019

Deep Residual Convolutional Neural Network for Protein-Protein Interaction Extraction.
IEEE Access, 2019

The Transverse Ultrasonogram of Thyroid Papillary Carcinoma Has a Better Prediction Accuracy Than the Longitudinal One.
IEEE Access, 2019

Accurate Prediction of Neoadjuvant Chemotherapy Pathological Complete Remission (pCR) for the Four Sub-Types of Breast Cancer.
IEEE Access, 2019

DietLens-Eout: Large Scale Restaurant Food Photo Recognition.
Proceedings of the 2019 on International Conference on Multimedia Retrieval, 2019

2018
Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals.
Sensors, 2018

TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis.
Comput. Biol. Medicine, 2018

pyHIVE, a health-related image visualization and engineering system using Python.
BMC Bioinform., 2018

2017
hMuLab: A Biomedical Hybrid MUlti-LABel Classifier Based on Multiple Linear Regression.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs).
J. Integr. Bioinform., 2017

2016
CD3D and PRKCQ work together to discriminate between B-cell and T-cell acute lymphoblastic leukemia.
Comput. Biol. Medicine, 2016

McTwo: a two-step feature selection algorithm based on maximal information coefficient.
BMC Bioinform., 2016

2015
Specific Biomarkers: Detection of Cancer Biomarkers Through High-Throughput Transcriptomics Data.
Cogn. Comput., 2015

Personalized clinical data screening: Special issue on health informatics.
Comput. Biol. Medicine, 2015

A novel electrocardiogram parameterization algorithm and its application in myocardial infarction detection.
Comput. Biol. Medicine, 2015

2014
A novel molecular typing method of Mycobacteria based on DNA barcoding visualization.
J. Clin. Bioinform., 2014

WinHAP2: an extremely fast haplotype phasing program for long genotype sequences.
BMC Bioinform., 2014

2011
Evaluation of normalization methods for RNA-Seq gene expression estimation.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data.
Bioinform., 2010

2009
Large-Scale Analyses of Glycosylation in Cellulases.
Genom. Proteom. Bioinform., 2009

<i>De novo</i> computational prediction of non-coding RNA genes in prokaryotic genomes.
Bioinform., 2009

2008
Barcodes for genomes and applications.
BMC Bioinform., 2008

2006
SUMOsp: a web server for sumoylation site prediction.
Nucleic Acids Res., 2006

CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
Bioinform., 2006

2005
GPS: a comprehensive www server for phosphorylation sites prediction.
Nucleic Acids Res., 2005

No-wait scheduling in single-hop multi-channel LANs.
Inf. Process. Lett., 2005

Construction of Small Worlds in the Physical Topology of Wireless Networks
CoRR, 2005

2004
Algorithms for Loosely Constrained Multiple Sequence Alignment.
Proceedings of the Computational and Information Science, First International Symposium, 2004

2003
Minimizing ADMs on WDM Directed Fiber Trees.
J. Comput. Sci. Technol., 2003


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