Feichen Shen

Özlem Uzuner

J. Am. Medical Informatics Assoc., 2021

Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient Subgrouping.

[BibT_eX]

[DOI]

CoRR, 2021

Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features.

[BibT_eX]

[DOI]

CoRR, 2021

POKR: Building a Computable Heterogeneous Knowledge Resource for Precision Oncology.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

MedSTS: a resource for clinical semantic textual similarity.

[BibT_eX]

[DOI]

Lang. Resour. Evaluation, 2020

Clinical concept extraction: A methodology review.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2020

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation.

[BibT_eX]

[DOI]

Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings.

[BibT_eX]

[DOI]

Andrew Wen

Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System.

[BibT_eX]

[DOI]

Andrew Wen

Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Extracting Patient Genetic Information from Unstructured Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

Identifying Rare Disease Studies by Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

2019

Discovering associations between problem list and practice setting.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2019

A clinical text classification paradigm using weak supervision and deep representation.

[BibT_eX]

[DOI]

Elizabeth J. Atkinson

Shreyasee Amin

BMC Medical Informatics Decis. Mak., 2019

Rare disease knowledge enrichment through a data-driven approach.

[BibT_eX]

[DOI]

Yiqing Zhao

BMC Medical Informatics Decis. Mak., 2019

Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes.

[BibT_eX]

[DOI]

David W. Larson

James M. Naessens

Elizabeth B. Habermann

Fabricio Sampaio Peres Kury

Sunghwan Sohn

J. Heal. Informatics Res., 2019

Special Issue on Healthcare Knowledge Discovery and Management.

[BibT_eX]

[DOI]

J. Heal. Informatics Res., 2019

An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling.

[BibT_eX]

[DOI]

J. Heal. Informatics Res., 2019

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2019

Ensembles of natural language processing systems for portable phenotyping solutions.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2019

Development of Clinical Concept Extraction Applications: A Methodology Review.

[BibT_eX]

[DOI]

CoRR, 2019

Towards Semantic Big Graph Analytics for Cross-Domain Knowledge Discovery.

[BibT_eX]

[DOI]

CoRR, 2019

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model.

[BibT_eX]

[DOI]

CoRR, 2019

Integrating word embedding neural networks with PubMed abstracts to extract keyword proximity of chronic diseases.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

Leveraging a Data-Driven Strategy to Enrich Rare Disease Knowledge.

[BibT_eX]

[DOI]

Yiqing Zhao

Proceedings of the AMIA 2019, 2019

2018

Clinical information extraction applications: A literature review.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2018

A comparison of word embeddings for the biomedical natural language processing.

[BibT_eX]

[DOI]

Naveed Afzal

J. Biomed. Informatics, 2018

A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction.

[BibT_eX]

[DOI]

Elizabeth J. Atkinson

Shreyasee Amin

CoRR, 2018

MedTQ: Dynamic Topic Discovery and Query Generation for Medical Ontologies.

[BibT_eX]

[DOI]

Yugyung Lee

CoRR, 2018

Extracting chemical-protein relations using attention-based neural networks.

[BibT_eX]

[DOI]

Ravikumar Komandur Elayavilli

Vipin Chaudhary

Database J. Biol. Databases Curation, 2018

Predicting Practice Setting Using Topic Modeling.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

BioCreative/OHNLP Challenge 2018.

[BibT_eX]

[DOI]

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Combining Knowledge and Data Driven Insights to Facilitate the Differential Diagnosis of Rare Diseases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

2017

Need of informatics in designing interoperable clinical registries.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2017

MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for Keyphrase Classification in Scientific Publications.

[BibT_eX]

[DOI]

Proceedings of the 11th International Workshop on Semantic Evaluation, 2017

Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

On Mapping Textual Queries to a Common Data Model.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017

Content Analysis of Free-Text Family History.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2017

Populating Physician Biographical Pages Based on EMR Data.

[BibT_eX]

[DOI]

Sunghwan Sohn

Proceedings of the Summit on Clinical Research Informatics, 2017

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature.

[BibT_eX]

[DOI]

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

Recommending education materials for diabetic questions using information retrieval approaches.

[BibT_eX]

[DOI]

Xusheng Liu

Proceedings of the AMIA 2017, 2017

Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Accelerating Rare Disease Diagnosis with Collaborative Filtering.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Mining Hierarchies and Similarity Clusters from Value Set Repositories.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

A Resource for Clinical Semantic Textual Similarity.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

2015

Collaborative Mobile-Cloud Computing for Civil Infrastructure Condition Inspection.

[BibT_eX]

[DOI]

J. Comput. Civ. Eng., 2015

PEMAR: A pervasive middleware for activity recognition with smart phones.

[BibT_eX]

[DOI]

Prakash Vaka

Mayanka Chandrashekar

Yugyung Lee

Proceedings of the 2015 IEEE International Conference on Pervasive Computing and Communication Workshops, 2015

SAMAF: Situation aware mobile apps framework.

[BibT_eX]

[DOI]

Yugyung Lee

Proceedings of the 2015 IEEE International Conference on Pervasive Computing and Communication Workshops, 2015

A pervasive framework for real-time activity patterns of mobile users.

[BibT_eX]

[DOI]