Federico Marini

According to our database, Federico Marini authored at least 10 papers between 2016 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Ten simple rules to host an inclusive conference.

Rocío Joo, Andrea Sánchez-Tapia, Sara Mortara, Yanina Bellini Saibene, Heather L. Turner, Dorothea Hug Peter, Natalia Soledad Morandeira, Matt Bannert, Batool Almazrouq, Elizabeth Hare, Laura Ación, Juan Pablo Narváez-Gómez, Marcela Alfaro Cordoba, Federico Marini, Rita Giordano, Silvia Canelón, Anicet Ebou, Adithi R. Upadhya, Joselyn Chávez, Janani Ravi

PLoS Comput. Biol., 2022

2021

TREND-DB - a transcriptome-wide atlas of the dynamic landscape of alternative polyadenylation.

Federico Marini, Denise Scherzinger, Sven Danckwardt

Nucleic Acids Res., 2021

cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.

Arsenij Ustjanzew, Alexander Desuki, Christoph Ritzel, Alina Corinna Dolezilek, Daniel-Christoph Wagner, Jan Christoph, Philipp Unberath, Thomas Kindler, Jörg Faber, Federico Marini, Torsten Panholzer, Claudia Paret

BMC Medical Informatics Decis. Mak., 2021

GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.

Federico Marini, Annekathrin Ludt, Jan Linke, Konstantin Strauch

BMC Bioinform., 2021

2020

ideal: an R/Bioconductor package for interactive differential expression analysis.

Federico Marini, Jan Linke, Harald Binder

BMC Bioinform., 2020

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.

Krutika S. Gaonkar, Federico Marini, Komal S. Rathi, Payal Jain, Yuankun Zhu, Nicholas A. Chimicles, Miguel A. Brown, Ammar S. Naqvi, Bo Zhang, Phillip B. Storm, John M. Maris, Pichai Raman, Adam C. Resnick, Konstantin Strauch, Jaclyn N. Taroni, Jo Lynne Rokita

BMC Bioinform., 2020

2019

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.

Federico Marini, Harald Binder

BMC Bioinform., 2019

2018

iSEE: Interactive SummarizedExperiment Explorer.

Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun

F1000Research, 2018

2017

Development of applications for interactive, comprehensive and reproducible data analysis = Entwicklung von Applikationen für interaktive, umfassende und reproduzierbare Datenanalyse.

Federico Marini

PhD thesis, 2017

2016

Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective.

Alicia Poplawski, Federico Marini, Moritz Hess, Tanja Zeller, Johanna Mazur, Harald Binder

Briefings Bioinform., 2016