Federico Fogolari

According to our database, Federico Fogolari authored at least 18 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2.

Miguel A. Soler, Ozge Ozkilinc, Yamanappa Hunashal, Paolo Giannozzi, Gennaro Esposito, Federico Fogolari

Comput. Phys. Commun., June, 2023

2020

Generalized Born radii computation using linear models and neural networks.

Saida S. Mohamed, Gennaro Esposito, Giuseppe Serra, Federico Fogolari

Bioinform., 2020

2018

PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles.

Federico Fogolari, Ornela Maloku, Cedrix Jurgal Dongmo Foumthuim, Alessandra Corazza, Gennaro Esposito

J. Chem. Inf. Model., 2018

2016

Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data.

Fabrizio Serra, Chiara Romualdi, Federico Fogolari

J. Comput. Biol., 2016

2015

Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes.

Federico Fogolari, Alessandra Corazza, Gennaro Esposito

J. Comput. Chem., 2015

2012

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.

Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito

BMC Bioinform., 2012

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari

Bioinform., 2012

Fast structure similarity searches among protein models: efficient clustering of protein fragments.

Federico Fogolari, Alessandra Corazza, Paolo Viglino, Gennaro Esposito

Algorithms Mol. Biol., 2012

2011

Exploring Protein Fragment Assembly Using CLP.

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli

Proceedings of the IJCAI 2011, 2011

2010

CLP-based protein fragment assembly.

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli

Theory Pract. Log. Program., 2010

2007

Agent-based protein structure prediction.

Luca Bortolussi, Agostino Dovier, Federico Fogolari

Multiagent Grid Syst., 2007

2005

A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.

Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo

BMC Bioinform., 2005

2004

Constraint Logic Programming approach to protein structure prediction.

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari

BMC Bioinform., 2004

Protein Folding Simulation in CCP.

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari

Proceedings of the Logic Programming, 20th International Conference, 2004

2003

Amino acid empirical contact energy definitions for fold recognition in the space of contact maps.

Marco Berrera, Henriette Molinari, Federico Fogolari

BMC Bioinform., 2003

Protein Folding in CLP(FD) with Empirical Contact Energies.

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari

Proceedings of the Recent Advances in Constraints, 2003

2002

Using Secondary Structure Information for Protein Folding in CLP(FD).

Agostino Dovier, Matteo Burato, Federico Fogolari

Proceedings of the 11th International Workshop on Functional and (Constraint) Logic Programming, 2002

2001

Molecular mechanics and dynamics of biomolecules using a solvent continuum model.

Federico Fogolari, Gennaro Esposito, Paolo Viglino, Henriette Molinari

J. Comput. Chem., 2001