Fabio Rinaldi

Orcid: 0000-0001-5718-5462

Affiliations:
  • IDSIA, Lugano, Switzerland
  • University of Zurich, Switzerland (former)


According to our database1, Fabio Rinaldi authored at least 111 papers between 1997 and 2024.

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Bibliography

2024
NLP_DI at NADI 2024 shared task: Multi-label Arabic Dialect Classifications with an Unsupervised Cross-Encoder.
Proceedings of The Second Arabic Natural Language Processing Conference, 2024

BUST: Benchmark for the evaluation of detectors of LLM-Generated Text.
Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

2023
Optimizing the Size of Subword Vocabularies in Dialect Classification.
Proceedings of the Tenth Workshop on NLP for Similar Languages, Varieties and Dialects, 2023

Boosting Radiology Report Generation by Infusing Comparison Prior.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

2022
Revisiting the decay of scientific email addresses.
J. Assoc. Inf. Sci. Technol., 2022

An annotated dataset for extracting gene-melanoma relations from scientific literature.
J. Biomed. Semant., 2022

NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification.
Proceedings of the The Seventh Arabic Natural Language Processing Workshop, 2022

Early Guessing for Dialect Identification.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022

mattica@SMM4H'22: Leveraging sentiment for stance & premise joint learning.
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022

2021
Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information.
J. Biomed. Informatics, 2021

MultiGBS: A multi-layer graph approach to biomedical summarization.
J. Biomed. Informatics, 2021

Parallel sequence tagging for concept recognition.
BMC Bioinform., 2021

Learning adaptive representations for entity recognition in the biomedical domain.
J. Biomed. Semant., 2021

Approaching SMM4H with auto-regressive language models and back-translation.
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021

Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish.
Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Student Research Workshop, 2021

2020
RBF Solver for Quaternions Interpolation.
CoRR, 2020

Cross-lingual Transfer-learning Approach to Negation Scope Resolution.
Proceedings of the 5th Swiss Text Analytics Conference and the 16th Conference on Natural Language Processing, 2020

COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media.
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, 2020

SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces.
Proceedings of the Fourteenth Workshop on Semantic Evaluation, 2020

Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining.
Proceedings of the Pattern Recognition. ICPR International Workshops and Challenges, 2020

Exploring the feature space of character-level embeddings.
Proceedings of the 28th European Symposium on Artificial Neural Networks, 2020

Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature.
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020

2019
OGER++: hybrid multi-type entity recognition.
J. Cheminformatics, 2019

A new approach and gold standard toward author disambiguation in MEDLINE.
J. Am. Medical Informatics Assoc., 2019

Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review.
CoRR, 2019

Approaching SMM4H with Merged Models and Multi-task Learning.
Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, 2019

UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

2018
UZH@SMM4H: System Descriptions.
Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, 2018

Learning Preferences for Large Scale Multi-label Problems.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2018, 2018

Learning Representations for Biomedical NER.
Proceedings of the 2nd Workshop on Natural Language for Artificial Intelligence (NL4AI 2018) co-located with 17th International Conference of the Italian Association for Artificial Intelligence (AI*IA 2018), 2018

2017
Entity recognition in the biomedical domain using a hybrid approach.
J. Biomed. Semant., 2017

Erratum: Strategies towards digital and semi-automated curation in RegulonDB.
Database J. Biol. Databases Curation, 2017

Strategies towards digital and semi-automated curation in RegulonDB.
Database J. Biol. Databases Curation, 2017

Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis.
Database J. Biol. Databases Curation, 2017

2016
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
Nucleic Acids Res., 2016

Overview of the interactive task in BioCreative V.
Database J. Biol. Databases Curation, 2016

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.
Database J. Biol. Databases Curation, 2016

Using a Hybrid Approach for Entity Recognition in the Biomedical Domain.
Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, 2016

The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types.
Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, 2016

2015
An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database.
Polibits, 2015

Constructing a Syndromic Terminology Resource for Veterinary Text Mining.
Proceedings of the 11th International Conference on Terminology and Artificial Intelligence, 2015

A Combined Resource of Biomedical Terminology and its Statistics.
Proceedings of the 11th International Conference on Terminology and Artificial Intelligence, 2015

Large-scale Information Extraction for Assisted Curation of the Biomedical Literature.
Proceedings of 1st AI*IA Workshop on Intelligent Techniques At LIbraries and Archives co-located with XIV Conference of the Italian Association for Artificial Intelligence, 2015

2014
OntoGene web services for biomedical text mining.
BMC Bioinform., 2014

BioC implementations in Go, Perl, Python and Ruby.
Database J. Biol. Databases Curation, 2014

Assisted curation of regulatory interactions and growth conditions of OxyR in <i>E. coli</i> K-12.
Database J. Biol. Databases Curation, 2014

BioC interoperability track overview.
Database J. Biol. Databases Curation, 2014

Semi-Automated Semantic Annotation of the Biomedical Literature.
Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction.
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Text Mining Technologies for Database Curation.
Proceedings of the KDIR 2014 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Rome, Italy, 21, 2014

2013
Using the OntoGene pipeline for the triage task of BioCreative 2012.
Database J. Biol. Databases Curation, 2013

BioC: a minimalist approach to interoperability for biomedical text processing.
Database J. Biol. Databases Curation, 2013

Assisted editing in the biomedical domain: motivation and challenges.
Proceedings of the ACM Symposium on Document Engineering 2013, 2013

Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

Exploiting BabelNet for Multilingual Biomedical Synonym Expansion.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

UZH in BioNLP 2013.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
Relation mining experiments in the pharmacogenomics domain.
J. Biomed. Informatics, 2012

Ranking relations between diseases, drugs and genes for a curation task.
J. Biomed. Semant., 2012

Using ODIN for a PharmGKB revalidation experiment.
Database J. Biol. Databases Curation, 2012

Using biomedical databases as knowledge sources for large-scale text mining.
Proceedings of the 2nd International Workshop on Exploiting Large Knowledge Repositories, 2012

Dependency parsing for interaction detection in pharmacogenomics.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Change of Biomedical Domain Terminology Over Time.
Proceedings of the Human Language Technologies - The Baltic Perspective, 2012

Notes about the OntoGene Pipeline.
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012

Term Evolution: Use of Biomedical Terminologies.
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012

2011
Detection of interaction articles and experimental methods in biomedical literature.
BMC Bioinform., 2011

The gene normalization task in BioCreative III.
BMC Bioinform., 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinform., 2011

BioCreative III interactive task: an overview.
BMC Bioinform., 2011

Towards mature use of semantic resources for biomedical analyses.
J. Biomed. Semant., 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomed. Semant., 2011

Terminological resources for text mining over biomedical scientific literature.
Artif. Intell. Medicine, 2011

Ranking Interactions for a Curation Task.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

An Incremental Model for the Coreference Resolution Task of BioNLP 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010
OntoGene in BioCreative II.5.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009
Support tools for literature-based information access in molecular biology.
Proceedings of the 3rd International Universal Communication Symposium, 2009

Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2009

TX Task: Automatic Detection of Focus Organisms in Biomedical Publications.
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

UZurich in the BioNLP 2009 Shared Task.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature.
Proceedings of the Artificial Intelligence in Medicine, 2009

2008
Dependency-Based Relation Mining for Biomedical Literature.
Proceedings of the International Conference on Language Resources and Evaluation, 2008

2007
Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach.
Artif. Intell. Medicine, 2007

Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task.
Proceedings of the EMNLP-CoNLL 2007, 2007

2006
An environment for relation mining over richly annotated corpora: the case of GENIA.
BMC Bioinform., 2006

Tools for Text Mining over Biomedical Literature.
Proceedings of the ECAI 2006, 17th European Conference on Artificial Intelligence, August 29, 2006

2005
A symbolic approach to automatic multiword term structuring.
Comput. Speech Lang., 2005

Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines.
Proceedings of the Reasoning Web, 2005

Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing.
Proceedings of the Natural Language Understanding and Cognitive Science, 2005

Relation Mining over a Corpus of Scientific Literature.
Proceedings of the Artificial Intelligence in Medicine, 2005

2004
Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2004

Question Answering in Terminology-Rich Technical Domains.
Proceedings of the New Directions in Question Answering, 2004

Steps Towards Semantically Annotated Language Resources.
Proceedings of the Fourth International Conference on Language Resources and Evaluation, 2004

Exploiting Language Resources for Semantic Web Annotations.
Proceedings of the Fourth International Conference on Language Resources and Evaluation, 2004

The Role of MultiWord Terminology in Knowledge Management.
Proceedings of the Fourth International Conference on Language Resources and Evaluation, 2004

Exploiting Technical Terminology for Knowledge Management.
Proceedings of the EKAW 2004 Workshop on Application of Language and Semantic Technologies to support Knowledge Management Processes, 2004

2003
Extracción automática de respuestas para documentación técnica.
Proces. del Leng. Natural, 2003

ExtrAns: Extracting Answers from Technical Texts.
IEEE Intell. Syst., 2003

Knowledge-Based Question Answering.
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2003

Breaking the Deadlock.
Proceedings of the On The Move to Meaningful Internet Systems 2003: CoopIS, DOA, and ODBASE, 2003

Parmenides: An Opportunity for ISO TC37 SC4?
Proceedings of the ACL 2003 Workshop on Linguistic Annotation: Getting the Model Right, 2003

Exploiting Paraphrases in a Question Answering System.
Proceedings of the Second International Workshop on Paraphrasing, 2003

2002
Technical Terminology as a Critical Resource.
Proceedings of the Third International Conference on Language Resources and Evaluation, 2002

Towards Answer Extraction: An application to Technical Domains.
Proceedings of the 15th European Conference on Artificial Intelligence, 2002

Answer Extraction in Technical Domains.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2002

2000
Flexible Text Classification for Financial Applications: The Facile System.
Proceedings of the ECAI 2000, 2000

1999
CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents.
Proceedings of the Foundations of Intelligent Systems, 11th International Symposium, 1999

FACILE: Classifying Texts Integrating Pattern Matching and Information Extraction.
Proceedings of the Sixteenth International Joint Conference on Artificial Intelligence, 1999

CONCERTO, Conceptual Indexing, Querying and Retrieval of Digital Documents.
Proceedings of the IEEE International Conference on Multimedia Computing and Systems, 1999

1998
FACILE: Description of the NE System Used for MUC-7.
Proceedings of the Seventh Message Understanding Conference: Proceedings of a Conference Held in Fairfax, 1998

1997
Integrated text categorisation and Information extraction using pattern matching and linguistic processing.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 1997


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