Fa Zhang

Renmin Han

Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy.

[BibT_eX]

[DOI]

Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

A Deep Reinforcement Learning-based Task Scheduling Algorithm for Energy Efficiency in Data Centers.

[BibT_eX]

[DOI]

Proceedings of the 30th International Conference on Computer Communications and Networks, 2021

TransPicker: a Transformer-based Framework for Particle Picking in cryoEM Micrographs.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

PG-TFNet: Transformer-based Fusion Network Integrating Pathological Images and Genomic Data for Cancer Survival Analysis.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Moment Invariants with Data Augmentation for Tongue Image Segmentation.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

SHREC 2021: Classification in Cryo-electron Tomograms.

[BibT_eX]

[DOI]

Proceedings of the 14th Eurographics Workshop on 3D Object Retrieval, 2021

2020

A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography.

[BibT_eX]

[DOI]

J. Comput. Biol., 2020

SHREC 2020: Classification in cryo-electron tomograms.

[BibT_eX]

[DOI]

Comput. Graph., 2020

Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography.

[BibT_eX]

[DOI]

BMC Bioinform., 2020

An Incentive Mechanism for Improving Energy Efficiency of Colocation Data Centers Based on Power Prediction.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium on Computers and Communications, 2020

Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

An Integration Framework for Liver Cancer Subtype Classification and Survival Prediction Based on Multi-omics Data.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Methodologies - 16th International Conference, 2020

PStream: Priority-Based Stream Scheduling for Heterogeneous Paths in Multipath-QUIC.

[BibT_eX]

[DOI]

Proceedings of the 29th International Conference on Computer Communications and Networks, 2020

An Energy Saving-Oriented Incentive Mechanism in Colocation Data Centers.

[BibT_eX]

[DOI]

Proceedings of the 29th International Conference on Computer Communications and Networks, 2020

PriorityBucket: A Multipath-QUIC Scheduler on Accelerating First Rendering Time in Page Loading.

[BibT_eX]

[DOI]

Xiang Shi

Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Eco-friendly Dynamic Task Scheduling for Regional Data Center.

[BibT_eX]

[DOI]

Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Energy Efficient Scheduling Based on Marginal Cost and Task Grouping in Data Centers.

[BibT_eX]

[DOI]

Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Jointly Optimizing the IT and Cooling Systems for Data Center Energy Efficiency based on Multi-Agent Deep Reinforcement Learning.

[BibT_eX]

[DOI]

Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

NANet: Nuclei-Aware Network for Grading of Breast Cancer in HE Stained Pathological Images.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

LR-Net: A Multi-task Model Using Relationship-based Contour Information to Enhance the Semantic Segmentation of Cancer Regions.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

A market-oriented incentive mechanism for emergency demand response in colocation data centers.

[BibT_eX]

[DOI]

Sustain. Comput. Informatics Syst., 2019

Energy-Aware Fault-Tolerant Dynamic Task Scheduling Scheme for Virtualized Cloud Data Centers.

[BibT_eX]

[DOI]

Sumarga Kumar Sah Tyagi

Mob. Networks Appl., 2019

PABO: Mitigating congestion via packet bounce in data center networks.

[BibT_eX]

[DOI]

Comput. Commun., 2019

PIXER: an automated particle-selection method based on segmentation using a deep neural network.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction.

[BibT_eX]

[DOI]

Bioinform., 2019

A joint method for marker-free alignment of tilt series in electron tomography.

[BibT_eX]

[DOI]

Bioinform., 2019

DM-SIRT: A Distributed Method for Multi-tilt Reconstruction in Electron Tomography.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019

FStream: Flexible Stream Scheduling and Prioritizing in Multipath-QUIC.

[BibT_eX]

[DOI]

Proceedings of the 25th IEEE International Conference on Parallel and Distributed Systems, 2019

Classifying Mixed Patterns of Proteins in High-Throughput Microscopy Images Using Deep Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Theories and Application, 2019

Integration of Multimodal Data for Breast Cancer Classification Using a Hybrid Deep Learning Method.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Theories and Application, 2019

Predicting Tumor Mutational Burden from Liver Cancer Pathological Images Using Convolutional Neural Network.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Weighted 3D Markov Random Field.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Classification in Cryo-Electron Tomograms.

[BibT_eX]

[DOI]

Proceedings of the 12th Eurographics Workshop on 3D Object Retrieval, 2019

2018

ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer.

[BibT_eX]

[DOI]

J. Comput. Biol., 2018

SegET: Deep Neural Network with Rich Contextual Features for Cellular Structures Segmentation in Electron Tomography Image.

[BibT_eX]

[DOI]

CoRR, 2018

PABO: A Link-Layer Congestion Mitigation Mechanism Based on Packet Bounce.

[BibT_eX]

[DOI]

CoRR, 2018

DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy.

[BibT_eX]

[DOI]

Bioinform., 2018

A fast fiducial marker tracking model for fully automatic alignment in electron tomography.

[BibT_eX]

[DOI]

Renmin Han

Xin Gao

Bioinform., 2018

Memory-Efficient and Stabilizing Management System and Parallel Methods for RELION Using CUDA and MPI.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

Energy-aware Fault-tolerant Scheduling Scheme based on Intelligent Prediction Model for Cloud Data Center.

[BibT_eX]

[DOI]

Proceedings of the Ninth International Green and Sustainable Computing Conference, 2018

A Hybrid Convolutional and Recurrent Deep Neural Network for Breast Cancer Pathological Image Classification.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Fiducial marker detection via deep learning approach for electron tomography.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

Towards the Tradeoffs in Designing Data Center Network Architectures.

[BibT_eX]

[DOI]

IEEE Trans. Parallel Distributed Syst., 2017

Joint Optimization of Operational Cost and Performance Interference in Cloud Data Centers.

[BibT_eX]

[DOI]

IEEE Trans. Cloud Comput., 2017

A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Hardness of Routing for Minimizing Superlinear Polynomial Cost in Directed Graphs.

[BibT_eX]

[DOI]

Proceedings of the Theory and Applications of Models of Computation, 2017

Real-time Task Scheduling for joint energy efficiency optimization in data centers.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE Symposium on Computers and Communications, 2017

Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

A Fully Automatic Geometric Parameters Determining Method for Electron Tomography.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Resource optimization for survivable embedding of virtual clusters in cloud data centers.

[BibT_eX]

[DOI]

Proceedings of the 36th IEEE International Performance Computing and Communications Conference, 2017

Online Flow Scheduling with Deadline for Energy Conservation in Data Center Networks.

[BibT_eX]

[DOI]

Proceedings of the 23rd IEEE International Conference on Parallel and Distributed Systems, 2017

Cost Reduction in Hybrid Clouds for Enterprise Computing.

[BibT_eX]

[DOI]

Proceedings of the 37th IEEE International Conference on Distributed Computing Systems Workshops, 2017

PABO: Congestion mitigation via packet bounce.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Communications, 2017

Energy efficiency in colocation data centers: A joint incentive mechanism approach.

[BibT_eX]

[DOI]

Proceedings of the Eighth International Green and Sustainable Computing Conference, 2017

Joint Optimization of Server and Network Resource Utilization in Cloud Data Centers.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE Global Communications Conference, 2017

2016

HDEER: A Distributed Routing Scheme for Energy-Efficient Networking.

[BibT_eX]

[DOI]

Youshi Wang

Jie Wu

IEEE J. Sel. Areas Commun., 2016

Green Data Centers: A Survey, Perspectives, and Future Directions.

[BibT_eX]

[DOI]

Xibo Jin

CoRR, 2016

COMRANCE: A rapid method for Network-on-Chip design space exploration.

[BibT_eX]

[DOI]

Proceedings of the Seventh International Green and Sustainable Computing Conference, 2016

aWGRS: Automates paired-end whole genome re-sequencing data analysis framework.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Randomized oblivious integral routing for minimizing power cost.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2015

Scheduling for energy minimization on restricted parallel processors.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2015

Multi-resource Energy-efficient Routing in Cloud Data Centers with Networks-as-a-Service.

[BibT_eX]

[DOI]

Jie Wu

CoRR, 2015

Multi-resource energy-efficient routing in cloud data centers with network-as-a-service.

[BibT_eX]

[DOI]

Jie Wu

Proceedings of the 2015 IEEE Symposium on Computers and Communication, 2015

Dual-centric Data Center Network Architectures.

[BibT_eX]

[DOI]

Proceedings of the 44th International Conference on Parallel Processing, 2015

Truthful Strategy and Resource Integration for Multi-tenant Data Center Demand Response.

[BibT_eX]

[DOI]

Youshi Wang

Proceedings of the Frontiers in Algorithmics - 9th International Workshop, 2015

2014

GreenDCN: A General Framework for Achieving Energy Efficiency in Data Center Networks.

[BibT_eX]

[DOI]

Jordi Arjona Aroca

IEEE J. Sel. Areas Commun., 2014

OS4M: Achieving Global Load Balance of MapReduce Workload by Scheduling at the Operation Level.

[BibT_eX]

[DOI]

CoRR, 2014

Improving the Load Balance of MapReduce Operations based on the Key Distribution of Pairs.

[BibT_eX]

[DOI]

CoRR, 2014

DEER: A distributed routing scheme for achieving network energy efficiency.

[BibT_eX]

[DOI]

Proceedings of the 20th IEEE International Workshop on Local & Metropolitan Area Networks, 2014

A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

An Improved Correlation Method Based on Rotation Invariant Feature for Automatic Particle Selection.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

Joint power optimization through VM placement and flow scheduling in data centers.

[BibT_eX]

[DOI]

Proceedings of the IEEE 33rd International Performance Computing and Communications Conference, 2014

Polylogarithmic Competitive Algorithm for Energy Minimization in Optical WDM Networks.

[BibT_eX]

[DOI]

Proceedings of the 22nd IEEE International Conference on Network Protocols, 2014

Energy-Efficient Flow Scheduling and Routing with Hard Deadlines in Data Center Networks.

[BibT_eX]

[DOI]

Kai Zheng

Shaolei Ren

Proceedings of the IEEE 34th International Conference on Distributed Computing Systems, 2014

Oblivious Integral Routing for Minimizing the Quadratic Polynomial Cost.

[BibT_eX]

[DOI]

Proceedings of the Frontiers in Algorithmics - 8th International Workshop, 2014

2013

Joint virtual machine assignment and traffic engineering for green data center networks.

[BibT_eX]

[DOI]

SIGMETRICS Perform. Evaluation Rev., 2013

A hop-by-hop energy efficient distributed routing scheme.

[BibT_eX]

[DOI]

SIGMETRICS Perform. Evaluation Rev., 2013

Iterative Methods in Large Field Electron Microscope Tomography.

[BibT_eX]

[DOI]

SIAM J. Sci. Comput., 2013

A General Framework for Achieving Energy Efficiency in Data Center Networks

[BibT_eX]

[DOI]

Jordi Arjona Aroca

CoRR, 2013

Routing for Energy Minimization with Discrete Cost Functions

[BibT_eX]

[DOI]

CoRR, 2013

A fast calculation strategy of density function in ISAF reconstruction algorithm.

[BibT_eX]

[DOI]

Sci. China Inf. Sci., 2013

Incorporating Rate Adaptation Into Green Networking for Future Data Centers.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE 12th International Symposium on Network Computing and Applications, 2013

A Universally Stable and Energy-Efficient Scheduling Protocol for Packet Switching Network.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE 12th International Symposium on Network Computing and Applications, 2013

Discrete Min-Energy Scheduling on Restricted Parallel Processors.

[BibT_eX]

[DOI]

Xibo Jin

Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Improving the Network Energy Efficiency in MapReduce Systems.

[BibT_eX]

[DOI]

Proceedings of the 22nd International Conference on Computer Communication and Networks, 2013

Risk management for virtual machines consolidation in data centers.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE Global Communications Conference, 2013

Energy-Efficient Scheduling with Time and Processors Eligibility Restrictions.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2013 Parallel Processing, 2013

2012

An effective approximation algorithm for the Malleable Parallel Task Scheduling problem.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2012

An Accelerated ISAF Algorithm with the Fast Mapping Strategy.

[BibT_eX]

[DOI]

J. Comput., 2012

High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

Energy-Efficient Network Routing with Discrete Cost Functions.

[BibT_eX]

[DOI]

Proceedings of the Theory and Applications of Models of Computation, 2012

2011

High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

Time-Slot Energy-Efficient Scheduling Algorithm for Capacity Limited Networks.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE/ACM International Conference on Green Computing and Communications (GreenCom), 2011

A fast mapping method in the ISAF reconstruction algorithm.

[BibT_eX]

[DOI]

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010

Protein classification using family profiles.

[BibT_eX]

[DOI]

Proceedings of the Seventh International Conference on Fuzzy Systems and Knowledge Discovery, 2010

Protein Sequence Alignment Algorithm Based on Hybrid Profile Information.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

An accurate, automatic method for markerless alignment of electron tomographic images.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

A Self-adaptive Greedy Scheduling Scheme for a Multi-Objective Optimization on Identical Parallel Machines.

[BibT_eX]

[DOI]

Proceedings of the Software Engineering, 2009

A framework to refine particle clusters produced by EMAN.

[BibT_eX]

[DOI]

Bioinform., 2009

Modified Simultaneous Algebraic Reconstruction Technique and its Parallelization in Cryo-electron Tomography.

[BibT_eX]

[DOI]

Xiaohua Wan

Proceedings of the 15th IEEE International Conference on Parallel and Distributed Systems, 2009

An effective scheduling algorithm for Linear Makespan Minimization on Unrelated Parallel Machines.

[BibT_eX]

[DOI]

Proceedings of the 16th International Conference on High Performance Computing, 2009

A New Method for Remote Protein Classification.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008

An improvement method based on OrthoMCL by adding the domain information.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007

Improved structural modeling based on conserved domain clusters and structure-anchored alignments.

[BibT_eX]

[DOI]

Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), 2007

Using Domain-Based Structural Ensemble to Improve Structure Modeling.

[BibT_eX]

[DOI]

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

A method to improve structural modeling based on conserved domain clusters.

[BibT_eX]

[DOI]

Lin Xu

Bo Yuan

Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

A method to integrate, assess and characterize the protein-protein interactions.

[BibT_eX]

[DOI]

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

A profile-based protein sequence alignment algorithm for a domain clustering database.

[BibT_eX]

[DOI]

Lin Xu

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005

The Construction of Structural Templates for the Modeling of conserved protein Domains.

[BibT_eX]

[DOI]

Proceedings of the Advances in Bioinformatics and Its Applications, 2005

Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm.

[BibT_eX]

[DOI]

Proceedings of the Advances in Bioinformatics and Its Applications, 2005

2004

Parallel divide and conquer bio-sequence comparison based on smith-waterman algorithm.

[BibT_eX]

[DOI]

Xiangzhen Qiao