Ewy A. Mathé

According to our database, Ewy A. Mathé authored at least 22 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Computational Metabolomics: Towards Molecules, Models, and their Meaning (Dagstuhl Seminar 24181).

Timothy M. D. Ebbels, Soha Hassoun, Ewy A. Mathé, Justin J. J. van der Hooft, Haley Chatelaine

Dagstuhl Reports, 2024

2023

Clustering rare diseases within an ontology-enriched knowledge graph.

Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé

J. Am. Medical Informatics Assoc., December, 2023

Pharos 2023: an integrated resource for the understudied human proteome.

Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea

Nucleic Acids Res., January, 2023

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.

John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A. Mathé

Bioinform., January, 2023

User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG).

Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

NCATS Inxight Drugs: a comprehensive and curated portal for translational research.

Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A. Mathé, Noel Southall

Nucleic Acids Res., 2022

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research.

Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea

J. Chem. Inf. Model., 2022

Rare disease-based scientific annotation knowledge graph.

Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu

Frontiers Artif. Intell., 2022

Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181).

Corey Broeckling, Timothy M. D. Ebbels, Ewy A. Mathé, Nicola Zamboni, Cecilia Wieder

Dagstuhl Reports, 2022

2021

TCRD and Pharos 2021: mining the human proteome for disease biology.

Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea

Nucleic Acids Res., 2021

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.

Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A. Mathé

BMC Bioinform., 2021

Network analyses in microbiome based on high-throughput multi-omics data.

Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu

Briefings Bioinform., 2021

Scientific Evidence Based Knowledge Graph in Rare Diseases.

Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A. Mathé, Eric Sid

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.

Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé

BMC Medical Informatics Decis. Mak., March, 2020

Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.

Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé

BMC Medical Informatics Decis. Mak., 2020

Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang

BMC Bioinform., 2020

2019

The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang

BMC Bioinform., 2019

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.

Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang

BMC Bioinform., 2019

2018

Matchmaking in Bioinformatics.

Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers

F1000Research, 2018

IntLIM: integration using linear models of metabolomics and gene expression data.

Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé

BMC Bioinform., 2018

2017

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.

Elizabeth Baskin, Rick Farouni, Ewy A. Mathé

Bioinform., 2017

2008

Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein.

Majid Masso, Ewy A. Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008