Esko Ukkonen
Orcid: 0000-0002-5978-1505Affiliations:
- University of Helsinki, Finland
According to our database1,
Esko Ukkonen
authored at least 147 papers
between 1976 and 2020.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
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on dl.acm.org
On csauthors.net:
Bibliography
2020
MODER2: first-order Markov modeling and discovery of monomeric and dimeric binding motifs.
Bioinform., 2020
2018
Proceedings of the Prague Stringology Conference 2018, 2018
2017
Bioinform., 2017
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017
2016
2015
2014
2013
Fast Matching of Transcription Factor Motifs Using Generalized Position Weight Matrix Models.
J. Comput. Biol., 2013
Proceedings of the Combinatorial Algorithms - 24th International Workshop, 2013
2012
Proceedings of the Mathematical Foundations of Computer Science 2012, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Algorithms Mol. Biol., 2011
Proceedings of the Algorithmic Learning Theory - 22nd International Conference, 2011
2010
J. Univers. Comput. Sci., 2010
2009
Theor. Comput. Sci., 2009
Theor. Comput. Sci., 2009
Bioinform., 2009
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009
2008
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
J. Integr. Bioinform., 2008
An analytic and systematic framework for estimating metabolic flux ratios from <sup>13</sup><i>C </i>tracer experiments.
BMC Bioinform., 2008
Briefings Bioinform., 2008
Proceedings of the Bioinformatics Research and Development, 2008
2007
BMC Bioinform., 2007
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
Proceedings of the Mathematical Foundations of Computer Science 2007, 2007
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007
2006
Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer Distributions for Flux Estimation.
Trans. Comp. Sys. Biology, 2006
The complexity of maximum matroid-greedoid intersection and weighted greedoid maximization<sup>, </sup>.
Discret. Appl. Math., 2006
Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes.
Bioinform., 2006
2005
Sequential and indexed two-dimensional combinatorial template matching allowing rotations.
Theor. Comput. Sci., 2005
Proceedings of the Implementation and Application of Automata, 2005
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005
Proceedings of the Advances in Informatics, 2005
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
2004
Theor. Comput. Sci., 2004
The Computational Complexity of Orientation Search Problems in Cryo-Electron Microscopy
CoRR, 2004
The Complexity of Maximum Matroid-Greedoid Intersection and Weighted Greedoid Maximization
CoRR, 2004
Proceedings of the Computational Science, 2004
Proceedings of the Algorithmic Learning Theory, 15th International Conference, 2004
Proceedings of the 2nd International Symposium on 3D Data Processing, 2004
2003
J. Discrete Algorithms, 2003
Proceedings of the Prague Stringology Conference 2003, Prague, Czech Republic, 2003
Proceedings of the STACS 2003, 20th Annual Symposium on Theoretical Aspects of Computer Science, Berlin, Germany, February 27, 2003
An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the ISMIR 2003, 2003
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
Proceedings of the Computer Science in Perspective, Essays Dedicated to Thomas Ottmann, 2003
2002
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002
Assigning probes into a small number of pools separable by electrophoresis.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
Correlating gene promoters and expression in gene disruption experiments.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002
Optimal Exact and Fast Approximate Two Dimensional Pattern Matching Allowing Rotations.
Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002
2001
Proceedings of the 2001 International Conference on Image Processing, 2001
Proceedings of the Fundamentals of Computation Theory, 13th International Symposium, 2001
2000
Proceedings of the Algorithm Theory, 2000
Combinatorial Methods for Approximate Pattern Matching under Rotations and Translations in 3D Arrays.
Proceedings of the Seventh International Symposium on String Processing and Information Retrieval, 2000
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
Proceedings of the Theoretical Computer Science, 2000
Proceedings of the Combinatorial Pattern Matching, 11th Annual Symposium, 2000
1999
SIAM J. Comput., 1999
Combinatorial methods for approximate image matching under translations and rotations.
Pattern Recognit. Lett., 1999
Proceedings of the Practical Aspects of Declarative Languages, 1999
Term Frequency-Based Identification of FAQ-Articles.
Proceedings of the Digital Libraries: Interdisciplinary Concepts, 1999
1998
Proceedings of the Grammatical Inference, 4th International Colloquium, 1998
Predicting gene regulatory elements from their expression data in the complete yeast genome.
Proceedings of the German Conference on Bioinformatics, 1998
Proceedings of the Flexible Query Answering Systems, Third International Conference, 1998
Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998
Proceedings of the Advances in Databases and Information Systems, 1998
1997
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
Using Trainable Computing Networks in the Optimization of Lake Regulation.
Proceedings of the Progress in Connectionist-Based Information Systems: Proceedings of the 1997 International Conference on Neural Information Processing and Intelligent Information Systems, 1997
Finding transcription factor binding site combinations in the yeast genome.
Proceedings of the German Conference on Bioinformatics, 1997
1996
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract).
Proceedings of the Algorithms and Computation, 7th International Symposium, 1996
Proceedings of the Computing and Combinatorics, Second Annual International Conference, 1996
1995
Editor's Foreword.
Nord. J. Comput., 1995
Proceedings of the Computational Learning Theory, Second European Conference, 1995
1994
Inf. Process. Lett., 1994
Proceedings of the Machine Learning: ECML-94, 1994
Proceedings of the Machine Learning: ECML-94, 1994
1993
Learning rules with local exceptions.
Proceedings of the First European Conference on Computational Learning Theory, 1993
Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993
1992
Theor. Comput. Sci., 1992
Constructing Suffix Trees On-Line in Linear Time.
Proceedings of the Algorithms, Software, Architecture, 1992
Proceedings of the Fifth Annual ACM Conference on Computational Learning Theory, 1992
1991
Proceedings of the Mathematical Foundations of Computer Science 1991, 1991
1990
Algorithmica, 1990
Proceedings of the SWAT 90, 1990
1988
Theor. Comput. Sci., 1988
Proceedings of the SWAT 88, 1988
1987
Flow Analysis of Prolog Programs.
Proceedings of the 1987 Symposium on Logic Programming, San Francisco, California, USA, August 31, 1987
1986
Nucleic Acids Res., 1986
Timestamped Term Representation for Implementing Prolog.
Proceedings of the 1986 Symposium on Logic Programming, 1986
Proceedings of the Mathematical Foundations of Computer Science 1986, 1986
Proceedings of the Third International Conference on Logic Programming, 1986
Proceedings of the Automata, Languages and Programming, 13th International Colloquium, 1986
1985
1984
Nucleic Acids Res., 1984
Finding Temporary Terms in Prolog Programs.
Proceedings of the International Conference on Fifth Generation Computer Systems, 1984
1983
SIAM J. Comput., 1983
Exponential Lower Bounds for Some NP-Complete Problems in a Restricted Linear Decision Tree Model.
BIT, 1983
Algorithms for Some String Matching Problems Arising in Molecular Genetics.
Proceedings of the Information Processing 83, 1983
Proceedings of the Fundamentals of Computation Theory, 1983
1982
Theor. Comput. Sci., 1982
J. ACM, 1982
1981
Theor. Comput. Sci., 1981
SIAM J. Comput., 1981
Proceedings of the 13th Annual ACM Symposium on Theory of Computing, 1981
1980
A Decision Method for the Equivalence of some Non-Real-Time Deterministic Pushdown Automata
Proceedings of the 12th Annual ACM Symposium on Theory of Computing, 1980
Balancing Syntactic and Semantic Power in Compiler Specification.
Proceedings of the Information Processing, Proceedings of the 8th IFIP Congress 1980, Tokyo, Japan - October 6-9, 1980 and Melbourne, Australia, 1980
On the Optimal Assignment of Attributes to Passes in Multi-Pass Attribute Evaluators.
Proceedings of the Automata, 1980
1979
Proceedings of the Theoretical Computer Science, 1979
Proceedings of the Automata, 1979
1978
Proceedings of the Mathematical Foundations of Computer Science 1978, 1978
1976
A Characterization of LL(k) Languages.
Proceedings of the Third International Colloquium on Automata, 1976