Ernst Houtgast

According to our database, Ernst Houtgast authored at least 14 papers between 2005 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

On Hardware-Accelerated Maximally-Efficient Systolic Arrays: Acceleration and Optimization of Genomics Pipelines Through Hardware/Software Co-Design.

Ernst Joachim Houtgast

PhD thesis, 2019

2018

Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.

Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars

Comput. Biol. Chem., 2018

Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM.

Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars

Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

2017

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL.

Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2016

An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM.

Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars

SIGARCH Comput. Archit. News, 2016

Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms.

Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars

Proceedings of the International Conference on ReConFigurable Computing and FPGAs, 2016

Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms.

Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars

Proceedings of the 24th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2016

GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing.

Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars

Proceedings of the Architecture of Computing Systems - ARCS 2016, 2016

2015

An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm.

Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars

Proceedings of the 2015 International Conference on Embedded Computer Systems: Architectures, 2015

Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm.

Nauman Ahmed, Vlad Mihai Sima, Ernst Houtgast, Koen Bertels, Zaid Al-Ars

Proceedings of the IEEE/ACM International Conference on Computer-Aided Design, 2015

2011

HMMER Performance Model for Multicore Architectures.

Sebastián Isaza, Ernst Houtgast, Georgi Gaydadjiev

Proceedings of the 14th Euromicro Conference on Digital System Design, 2011

Scaling HMMER Performance on Multicore Architectures.

Sebastián Isaza, Ernst Houtgast, Friman Sánchez, Alex Ramírez, Georgi Gaydadjiev

Proceedings of the International Conference on Complex, 2011

2009

Interaction Volume Management in a Multi-scale Virtual Environment.

Zachary Wartell, Ernst Houtgast, Onno Pfeiffer, Christopher D. Shaw, William Ribarsky, Frits H. Post

Proceedings of the Advances in Information and Intelligent Systems, 2009

2005

Navigation and Interaction in a Multi-Scale Stereoscopic Environment.

Ernst Houtgast, Onno Pfeiffer, Zachary Wartell, William Ribarsky, Frits H. Post

Proceedings of the IEEE Virtual Reality Conference 2005, 2005