Erin K. Molloy

According to our database, Erin K. Molloy authored at least 26 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Fast, parallel, and cache-friendly suffix array construction.

Jamshed Khan, Tobias Rubel, Erin K. Molloy, Laxman Dhulipala, Rob Patro

Algorithms Mol. Biol., December, 2024

Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem.

Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy

Algorithms Mol. Biol., December, 2024

2023

Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model.

Yunheng Han, Erin K. Molloy

Algorithms Mol. Biol., December, 2023

Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract).

Yunheng Han, Erin K. Molloy

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem.

Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2021

Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.

Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch

J. Comput. Biol., May, 2021

Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation.

Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi Zhang, Satish Rao, Tandy J. Warnow

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

TIPP2: metagenomic taxonomic profiling using phylogenetic markers.

Nidhi Shah, Erin K. Molloy, Mihai Pop, Tandy J. Warnow

Bioinform., 2021

Advancing admixture graph estimation via maximum likelihood network orientation.

Erin K. Molloy, Arun Durvasula, Sriram Sankararaman

Bioinform., 2021

Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation.

Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow

Algorithms Mol. Biol., 2021

2020

Supertree-like methods for genome-scale species tree estimation

Erin K. Molloy

PhD thesis, 2020

FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.

Erin K. Molloy, Tandy J. Warnow

Bioinform., 2020

Non-parametric correction of estimated gene trees using TRACTION.

Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Ananya Yammanuru, Tandy J. Warnow

Algorithms Mol. Biol., 2020

Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees.

Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow

Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

2019

TreeMerge: a new method for improving the scalability of species tree estimation methods.

Erin K. Molloy, Tandy J. Warnow

Bioinform., 2019

Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge.

Erin K. Molloy, Tandy J. Warnow

Algorithms Mol. Biol., 2019

TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees.

Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow

Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019

Using INC Within Divide-and-Conquer Phylogeny Estimation.

Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow

Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019

2018

OCTAL: Optimal Completion of gene trees in polynomial time.

Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow

Algorithms Mol. Biol., 2018

NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees.

Erin K. Molloy, Tandy J. Warnow

Proceedings of the Comparative Genomics - 16th International Conference, 2018

2017

Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL.

Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

2015

Using Edge Voxel Information to Improve Motion Regression for rs-fMRI Connectivity Studies.

Rémi Patriat, Erin K. Molloy, Rasmus M. Birn

Brain Connect., 2015

2014

The influence of spatial resolution and smoothing on the detectability of resting-state and task fMRI.

Erin K. Molloy, Mary E. Meyerand, Rasmus M. Birn

NeuroImage, 2014

The Influence of Physiological Noise Correction on Test-Retest Reliability of Resting-State Functional Connectivity.

Rasmus M. Birn, Maria Daniela Cornejo, Erin K. Molloy, Rémi Patriat, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary Elizabeth Meyerand, Vivek Prabhakaran

Brain Connect., 2014

2013

The effect of resting condition on resting-state fMRI reliability and consistency: A comparison between resting with eyes open, closed, and fixated.

Rémi Patriat, Erin K. Molloy, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary E. Meyerand, Vivek Prabhakaran, Rasmus M. Birn

NeuroImage, 2013

The effect of scan length on the reliability of resting-state fMRI connectivity estimates.

Rasmus M. Birn, Erin K. Molloy, Rémi Patriat, Taurean Parker, Timothy B. Meier, Gregory R. Kirk, Veena A. Nair, Mary Elizabeth Meyerand, Vivek Prabhakaran

NeuroImage, 2013