Erik Lindahl

Orcid: 0000-0002-2734-2794

According to our database¹, Erik Lindahl authored at least 34 papers between 2005 and 2024.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of four.

Timeline

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In proceedings

Article

PhD thesis

Dataset

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Links

On csauthors.net:

Bibliography

2024

Simulating the Skin Permeation Process of Ionizable Molecules.

[BibT_eX]

[DOI]

J. Chem. Inf. Model., 2024

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability.

[BibT_eX]

[DOI]

Andrey Alekseenko

Szilárd Páll

Erik Lindahl

CoRR, 2024

2023

Understanding Drug Skin Permeation Enhancers Using Molecular Dynamics Simulations.

[BibT_eX]

[DOI]

J. Chem. Inf. Model., August, 2023

Gentle and fast all-atom model refinement to cryo-EM densities via a maximum likelihood approach.

[BibT_eX]

[DOI]

Christian Blau

Linnea Yvonnesdotter

Erik Lindahl

PLoS Comput. Biol., 2023

2021

Experiences With Adding SYCL Support to GROMACS.

[BibT_eX]

[DOI]

Andrey Alekseenko

Szilárd Páll

Erik Lindahl

Proceedings of the IWOCL'21: International Workshop on OpenCL, Munich Germany, April, 2021, 2021

2020

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS.

[BibT_eX]

[DOI]

CoRR, 2020

2019

Ten simple rules on how to create open access and reproducible molecular simulations of biological systems.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Sharing Data from Molecular Simulations.

[BibT_eX]

[DOI]

J. Chem. Inf. Model., 2019

eBDIMS server: protein transition pathways with ensemble analysis in 2D-motion spaces.

[BibT_eX]

[DOI]

Bioinform., 2019

The Future of Swedish e-Science: SeRC 2.0.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on eScience, 2019

2018

e-Science in Scandinavia - The Case of the Swedish e-Science Research Center.

[BibT_eX]

[DOI]

Inform. Spektrum, 2018

2017

Copernicus, a hybrid dataflow and peer-to-peer scientific computing platform for efficient large-scale ensemble sampling.

[BibT_eX]

[DOI]

Future Gener. Comput. Syst., 2017

2016

The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the <i>Shaker</i> Voltage-Gated Potassium Channel.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2016

2014

An efficient and extensible format, library, and API for binary trajectory data from molecular simulations.

[BibT_eX]

[DOI]

J. Comput. Chem., 2014

Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS.

[BibT_eX]

[DOI]

Proceedings of the Solving Software Challenges for Exascale, 2014

2013

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

[BibT_eX]

[DOI]

Bioinform., 2013

2012

Molecular Mechanism for the Dual Alcohol Modulation of Cys-loop Receptors.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2012

Improved model quality assessment using ProQ2.

[BibT_eX]

[DOI]

Arjun Ray

Erik Lindahl

Björn Wallner

BMC Bioinform., 2012

Preparing Scientific Application Software for Exascale Computing.

[BibT_eX]

[DOI]

Proceedings of the Applied Parallel and Scientific Computing, 2012

2011

Copernicus: a new paradigm for parallel adaptive molecular dynamics.

[BibT_eX]

[DOI]

Proceedings of the Conference on High Performance Computing Networking, 2011

Poster: 3D tixels: a highly efficient algorithm for gpu/cpu-acceleration of molecular dynamics on heterogeneous parallel architectures.

[BibT_eX]

[DOI]

Szilárd Páll

Berk Hess

Erik Lindahl

Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011

2010

Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.

[BibT_eX]

[DOI]

Peter M. Kasson

Erik Lindahl

Vijay S. Pande

PLoS Comput. Biol., 2010

Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4.

[BibT_eX]

[DOI]

J. Chem. Inf. Model., 2010

A high-performance parallel-generalized born implementation enabled by tabulated interaction rescaling.

[BibT_eX]

[DOI]

Per Larsson

Erik Lindahl

J. Comput. Chem., 2010

Model quality assessment for membrane proteins.

[BibT_eX]

[DOI]

Arjun Ray

Erik Lindahl

Björn Wallner

Bioinform., 2010

2009

Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2009

2008

Effect of Cobratoxin Binding on the Normal Mode Vibration within Acetylcholine Binding Protein.

[BibT_eX]

[DOI]

J. Chem. Inf. Model., 2008

Architecture-aware design of a decimation filter based on a dual wordlength multiply-accumulate unit.

[BibT_eX]

[DOI]

Erik Lindahl

Oscar Gustafsson

Proceedings of the 42nd Asilomar Conference on Signals, Systems and Computers, 2008

2007

Normal-Mode Analysis of the Glycine Alpha1 Receptor by Three Separate Methods.

[BibT_eX]

[DOI]

Edward J. Bertaccini

James R. Trudell

Erik Lindahl

J. Chem. Inf. Model., 2007

Speeding up parallel GROMACS on high-latency networks.

[BibT_eX]

[DOI]

J. Comput. Chem., 2007

2006

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2006

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2006

Improved GROMACS Scaling on Ethernet Switched Clusters.

[BibT_eX]

[DOI]

Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface, 2006

2005

GROMACS: Fast, flexible, and free.

[BibT_eX]

[DOI]

Herman J. C. Berendsen

J. Comput. Chem., 2005

Erik Lindahl

Timeline

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On csauthors.net:

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