Eric Lyons

According to our database, Eric Lyons authored at least 22 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

CyVerse: Cyberinfrastructure for open science.

Tyson L. Swetnam, Parker B. Antin, Ryan Bartelme, Alexander Bucksch, David Camhy, Greg Chism, Illyoung Choi, Amanda M. Cooksey, Michele Cosi, Cindy Cowen, Michael Culshaw-Maurer, Robert Davey, Sean Davey, Upendra Devisetty, Tony Edgin, Andy Edmonds, Dmitry V. Fedorov, Jeremy Frady, John Fonner, Jeffrey K. Gillan, Iqbal Hossain, Blake Joyce, Konrad Lang, Tina Lee, Shelley Littin, Ian McEwen, Nirav C. Merchant, David Micklos, Andrew Nelson, Ashley Ramsey, Sarah Roberts, Paul Sarando, Edwin Skidmore, Jawon Song, Mary Margaret Sprinkle, Sriram Srinivasan, Dan Stanzione, Jonathan D. Strootman, Sarah Stryeck, Reetu Tuteja, Matthew Vaughn, Mojib Wali, Mariah Wall, Ramona Walls, Liya Wang, Todd Wickizer, Jason Williams, John Wregglesworth, Eric Lyons

PLoS Comput. Biol., February, 2024

PlantSegNet: 3D point cloud instance segmentation of nearby plant organs with identical semantics.

Ariyan Zarei, Bosheng Li, James C. Schnable, Eric Lyons, Duke Pauli, Kobus Barnard, Bedrich Benes

Comput. Electron. Agric., 2024

2022

MegaStitch: Robust Large-Scale Image Stitching.

Ariyan Zarei, Emmanuel Gonzalez, Nirav C. Merchant, Duke Pauli, Eric Lyons, Kobus Barnard

IEEE Trans. Geosci. Remote. Sens., 2022

NowCasting-Nets: Representation Learning to Mitigate Latency Gap of Satellite Precipitation Products Using Convolutional and Recurrent Neural Networks.

Mohammad Reza Ehsani, Ariyan Zarei, Hoshin Vijai Gupta, Kobus Barnard, Eric Lyons, Ali Behrangi

IEEE Trans. Geosci. Remote. Sens., 2022

Ten simple rules to ruin a collaborative environment.

Carolyn J. Lawrence-Dill, Robyn L. Allscheid, Albert Boaitey, Todd Bauman, Edward S. Buckler IV, Jennifer L. Clarke, Christopher Cullis, Jack Dekkers, Cassandra J. Dorius, Shawn F. Dorius, David Ertl, Matthew Homann, Guiping Hu, Mary Losch, Eric Lyons, Brenda Murdoch, Zahra-Katy Navabi, Somashekhar Punnuri, Fahad Rafiq, James M. Reecy, Patrick S. Schnable, Nicole M. Scott, Moira Sheehan, Xavier Sirault, Margaret Staton, Christopher K. Tuggle, Alison Van Eenennaam, Rachael Voas

PLoS Comput. Biol., 2022

2021

Ten simple rules to cultivate transdisciplinary collaboration in data science.

Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Lee Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant

PLoS Comput. Biol., 2021

2020

Ten simple rules for organizing a data science workshop.

Alise J. Ponsero, Ryan Bartelme, Gustavo de Oliveira Almeida, Alex Bigelow, Reetu Tuteja, Holly Ellingson, Tyson Lee Swetnam, Nirav C. Merchant, Maliaca Oxnam, Eric Lyons

PLoS Comput. Biol., 2020

2019

Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics.

David Sankoff, Chunfang Zheng, Yue Zhang, Joao Meidanis, Eric Lyons, Haibao Tang

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Chickspress: a resource for chicken gene expression.

Fiona M. McCarthy, Ken Pendarvis, Amanda M. Cooksey, Cathy R. Gresham, Matt Bomhoff, Sean Davey, Eric Lyons, Tad S. Sonstegard, Susan M. Bridges, Shane C. Burgess

Database J. Biol. Databases Curation, 2019

2018

Science Citation Knowledge Extractor.

Heather C. Lent, Gustave Hahn-Powell, Asher Haug-Baltzell, Sean Davey, Mihai Surdeanu, Eric Lyons

Frontiers Res. Metrics Anal., 2018

EPIC-CoGe: managing and analyzing genomic data.

Andrew D. L. Nelson, Asher Haug-Baltzell, Sean Davey, Brian D. Gregory, Eric Lyons

Bioinform., 2018

A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model.

Andreina I Castillo, Andrew D. L. Nelson, Asher Haug-Baltzell, Eric Lyons

Database J. Biol. Databases Curation, 2018

2017

FractBias: a graphical tool for assessing fractionation bias following polyploidy.

Blake L. Joyce, Asher Haug-Baltzell, Sean Davey, Matthew Bomhoff, James C. Schnable, Eric Lyons

Bioinform., 2017

SynMap2 and SynMap3D: web-based whole-genome synteny browsers.

Asher Haug-Baltzell, Sean A. Stephens, Sean Davey, Carlos Eduardo Scheidegger, Eric Lyons

Bioinform., 2017

2016

Bringing your tools to CyVerse Discovery Environment using Docker.

Upendra Kumar Devisetty, Kathleen Kennedy, Paul Sarando, Nirav C. Merchant, Eric Lyons

F1000Research, 2016

Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure concepts.

Tyson Lee Swetnam, J. D. Pelletier, Craig Rasmussen, N. R. Callahan, Nirav C. Merchant, Eric Lyons, Mats Rynge, Yan Liu, Viswanath Nandigam, Christopher J. Crosby

Proceedings of the XSEDE16 Conference on Diversity, 2016

The Trees in the Peaks.

David Sankoff, Chunfang Zheng, Eric Lyons, Haibao Tang

Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016

2015

Designing and Evaluating Scientific Workflows for Big Data Interactions.

Ronak Etemadpour, Matthew Bomhoff, Eric Lyons, Paul Murray, Angus G. Forbes

Proceedings of the Big Data Visual Analytics, 2015

2013

The dynamics of functional classes of plant genes in rediploidized ancient polyploids.

Eric C. H. Chen, Carlos Fernando Buen Abad Najar, Chunfang Zheng, Alex Brandts, Eric Lyons, Haibao Tang, Lorenzo Carretero-Paulet, Victor A. Albert, David Sankoff

BMC Bioinform., 2013

2012

Ancient angiosperm hexaploidy meets ancestral eudicot gene order.

Chunfang Zheng, Victor A. Albert, Eric Lyons, David Sankoff

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011

Screening synteny blocks in pairwise genome comparisons through integer programming.

Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling

BMC Bioinform., 2011

OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations.

Chunfang Zheng, Krister M. Swenson, Eric Lyons, David Sankoff

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011