Eric C. Rouchka

Orcid: 0000-0003-3487-6572

According to our database1, Eric C. Rouchka authored at least 56 papers between 1998 and 2020.

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Bibliography

2020
rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation.
Nucleic Acids Res., 2020

2018
DRETools: A tool-suite for differential RNA editing detection.
F1000Research, 2018

2017
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017.
BMC Bioinform., September, 2017

Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates.
Scientometrics, 2017

Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: bioinformatics.
BMC Bioinform., 2017

Circular RNA Detection from High-throughput Sequencing.
Proceedings of the International Conference on Research in Adaptive and Convergent Systems, 2017

2016
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016.
BMC Bioinform., August, 2016

rMAPS: RNA map analysis and plotting server for alternative exon regulation.
Nucleic Acids Res., 2016

Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2015
Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015.
BMC Bioinform., December, 2015

A less biased analysis of metalloproteins' coordination geometries.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells.
BMC Bioinform., 2014

Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014.
BMC Bioinform., 2014

UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm?
BMC Bioinform., 2014

A comparison of combined p-value methods for gene differential expression using RNA-seq data.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.
BMC Bioinform., 2013

An Island-Based Approach for Differential Expression Analysis.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012.
BMC Bioinform., 2012

Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration.
BMC Bioinform., 2012

AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities.
BMC Bioinform., 2012

RNASeq profiling of UTR expression during neuronal plasticity.
BMC Bioinform., 2012

Finding Data in DNA: Computer Forensic Investigations of Living Organisms.
Proceedings of the Digital Forensics and Cyber Crime - 4th International Conference, 2012

Poster: Image registration and visualization tool for in-situ gene expression images.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011
Reduced HyperBF Networks: Regularization by Explicit Complexity Reduction and Scaled Rprop-Based Training.
IEEE Trans. Neural Networks, 2011

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011.
BMC Bioinform., 2011

Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics.
BMC Bioinform., 2011

Meta-analysis of gene expression changes in response to radiation exposure.
BMC Bioinform., 2011

categoryCompare: high-throughput data meta-analysis using gene annotations.
BMC Bioinform., 2011

Interval Trees for Detection of Overlapping Genetic Entities.
Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, 2011

A Heuristic Algorithm for Detecting Intercellular Interactions.
Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, 2011

2010
Statistical analysis of multiple significance test methods for differential proteomics.
BMC Bioinform., 2010

Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data.
BMC Bioinform., 2010

Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010.
BMC Bioinform., 2010

Design of a DNA-based shift register.
BMC Bioinform., 2010

DNA-based random number generation in security circuitry.
Biosyst., 2010

A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

Phylogenomic Analysis Using Bayesian Congruence Measuring.
Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010

2009
Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009.
BMC Bioinform., 2009

Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU.
Proceedings of the 10th ACIS International Conference on Software Engineering, 2009

Feature Selection in Cancer Classification from mRNA Data Based on Localized Dimension Reduction.
Proceedings of the International Conference on Machine Learning and Applications, 2009

Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008.
BMC Bioinform., 2008

Techniques for the analysis of trichome <i>Pelagonium xhortorum </i>expressed sequence tags.
BMC Bioinform., 2008

Buffered codons in human transcriptional units.
BMC Bioinform., 2008

Random number generation for DNA-based security circuitry.
BMC Bioinform., 2008

Model Based Unsupervised Learning Guided by Abundant Background Samples.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

2007
rMotifGen: random motif generator for DNA and protein sequences.
BMC Bioinform., 2007

Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006
Aligning DNA sequences using dynamic programming.
ACM Crossroads, 2006

2005
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays.
BMC Bioinform., 2005

DNA motif detection using particle swarm optimization and expectation-maximization.
Proceedings of the 2005 IEEE Swarm Intelligence Symposium, 2005

Comparison of Current BLAST Software on Nucleotide Sequences.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

2003
Gibbs Recursive Sampler: finding transcription factor binding sites.
Nucleic Acids Res., 2003

2000
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998


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