Eran Agmon

According to our database, Eran Agmon authored at least 15 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.

Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert

PLoS Comput. Biol., 2023

2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

CoRR, 2022

Vivarium: an interface and engine for integrative multiscale modeling in computational biology.

Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert

Bioinform., 2022

2020

A Multi-Scale Approach to Modeling E. coli Chemotaxis.

Eran Agmon, Ryan K. Spangler

Entropy, 2020

Deriving the bodily grounding of living beings with molecular autopoiesis.

Eran Agmon

Adapt. Behav., 2020

2018

The Biological Foundations of Enactivism: A Report on a Workshop Held at Artificial Life XV.

Eran Agmon, Matthew D. Egbert, Nathaniel Virgo

Artif. Life, 2018

2017

Lineage selection leads to evolvability at large population sizes.

Nathaniel Virgo, Eran Agmon, Chrisantha Fernando

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Structural coupling of a Potts model cell.

Eran Agmon, James A. Glazier, Randall D. Beer

Proceedings of the Fourteenth European Conference Artificial Life, 2017

2016

Open-Ended Evolution: Perspectives from the OEE Workshop in York.

Tim Taylor, Mark A. Bedau, Alastair Channon, David H. Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily L. Dolson, Tom Froese, Simon J. Hickinbotham, Takashi Ikegami, Barry McMullin, Norman H. Packard, Steen Rasmussen, Nathaniel Virgo, Eran Agmon, Edward Clark, Simon McGregor, Charles Ofria, Glen E. P. Ropella, Lee Spector, Kenneth O. Stanley, Adam Stanton, Christopher Steven Timperley, Anya E. Vostinar, Michael J. Wiser

Artif. Life, 2016

Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary Co-construction.

Eran Agmon, Alexander J. Gates, Valentin Churavy, Randall D. Beer

Artif. Life, 2016

The Structure of Ontogenies in a Model Protocell.

Eran Agmon, Alexander J. Gates, Randall D. Beer

Artif. Life, 2016

2015

Ontogeny and adaptivity in a model protocell.

Eran Agmon, Alexander J. Gates, Randall D. Beer

Proceedings of the Thirteenth European Conference Artificial Life, 2015

2014

The evolution and analysis of action switching in embodied agents.

Eran Agmon, Randall D. Beer

Adapt. Behav., 2014

Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction.

Eran Agmon, Alexander J. Gates, Valentin Churavy, Randall D. Beer

Proceedings of the Fourteenth International Conference on the Simulation and Synthesis of Living Systems, 2014