Enis Afgan

According to our database, Enis Afgan authored at least 51 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Galaxy Helm chart: a standardized method for deploying production Galaxy servers.

Nuwan Goonasekera, Alexandru Mahmoud, Keith Suderman, Enis Afgan

Bioinform., 2024

2023

Right-sizing compute resource allocations for bioinformatics tools with Total Perspective Vortex.

Nuwan Goonasekera, Catherine J. Bromhead, Simon L. Gladman, Nate Coraor, Björn A. Grüning, Enis Afgan

CoRR, 2023

2022

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs

Nucleic Acids Res., 2022

Custos Secrets: a Service for Managing User-Provided Resource Credential Secrets for Science Gateways.

Isuru Ranawaka, Nuwan Goonasekera, Enis Afgan, Jim Basney, Suresh Marru, Marlon E. Pierce

Proceedings of the PEARC '22: Practice and Experience in Advanced Research Computing, Boston, MA, USA, July 10, 2022

2021

Experiences with Integrating Custos SecurityServices.

Isuru Ranawaka, Samitha Liyanage, Dannon Baker, Alexandru Mahmoud, Juleen Graham, Terry Fleury, Dimuthu Wannipurage, Yu Ma, Enis Afgan, Jim Basney, Suresh Marru, Marlon E. Pierce

CoRR, 2021

GalaxyCloudRunner: enhancing scalable computing for Galaxy.

Nuwan Goonasekera, Alexandru Mahmoud, John Chilton, Enis Afgan

Bioinform., 2021

GYAN: Accelerating Bioinformatics Tools in Galaxy with GPU-Aware Computation Mapping.

Gulsum Gudukbay, Jashwant Raj Gunasekaran, Yilin Feng, Mahmut T. Kandemir, Anton Nekrutenko, Chita R. Das, Paul Medvedev, Björn A. Grüning, Nate Coraor, Nathan Roach, Enis Afgan

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2021

2020

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko

Nucleic Acids Res., 2020

Cloud bursting galaxy: federated identity and access management.

Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks

Bioinform., 2020

Custos: Security Middleware for Science Gateways.

Isuru Ranawaka, Suresh Marru, Juleen Graham, Aarushi Bisht, Jim Basney, Terry Fleury, Jeff Gaynor, Dimuthu Wannipurage, Marcus Christie, Alexandru Mahmoud, Enis Afgan, Marlon E. Pierce

Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

2019

CloudLaunch: Discover and deploy cloud applications.

Enis Afgan, Andrew Lonie, James Taylor, Nuwan Goonasekera

Future Gener. Comput. Syst., 2019

Jetstream - Early operations performance, adoption, and impacts.

David Y. Hancock, Craig A. Stewart, Matthew Vaughn, Jeremy Fischer, John Michael Lowe, George W. Turner, Tyson Lee Swetnam, Tyler K. Chafin, Enis Afgan, Marlon E. Pierce, Winona Snapp-Childs

Concurr. Comput. Pract. Exp., 2019

2018

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg

Nucleic Acids Res., 2018

Towards a Science Gateway Reference Architecture.

Marlon E. Pierce, Mark A. Miller, Emre H. Brookes, Mona Wong, Yan Liu, Enis Afgan, Sandra Gesing, Maytal Dahan, Suresh Marru, Tony Walker

Proceedings of the 10th International Workshop on Science Gateways, 2018

Federated Galaxy: Biomedical Computing at the Frontier.

Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks

Proceedings of the 11th IEEE International Conference on Cloud Computing, 2018

2016

Introduction to the Special Issue on Distributed Computing with Applications in Bioengineering.

Karolj Skala, Roman Trobec, Enis Afgan

Scalable Comput. Pract. Exp., 2016

Cloudflow - enabling faster biomedical pipelines with MapReduce and Spark.

Lukas Forer, Enis Afgan, Hansi Weißensteiner, Davor Davidovic, Günther Specht, Florian Kronenberg, Sebastian Schönherr

Scalable Comput. Pract. Exp., 2016

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Enis Afgan, Dannon Baker, Marius van den Beek, Daniel J. Blankenberg, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Carl Eberhard, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Gregory Von Kuster, Eric Rasche, Nicola Soranzo, Nitesh Turaga, James Taylor, Anton Nekrutenko, Jeremy Goecks

Nucleic Acids Res., 2016

CloudBridge: a Simple Cross-Cloud Python Library.

Nuwan Goonasekera, Andrew Lonie, James Taylor, Enis Afgan

Proceedings of the XSEDE16 Conference on Diversity, 2016

Architectural models for deploying and running virtual laboratories in the cloud.

Enis Afgan, Andrew Lonie, James Taylor, Karolj Skala, Nuwan Goonasekera

Proceedings of the 39th International Convention on Information and Communication Technology, 2016

2015

Scalable Distributed Computing Hierarchy: Cloud, Fog and Dew Computing.

Karolj Skala, Davor Davidovic, Enis Afgan, Ivan Sovic, Zorislav Sojat

Open J. Cloud Comput., 2015

Enabling cloud bursting for life sciences within Galaxy.

Enis Afgan, Nathan Coraor, John Chilton, Dannon Baker, James Taylor, The Galaxy Team

Concurr. Comput. Pract. Exp., 2015

Cloudflow - A framework for MapReduce pipeline development in Biomedical Research.

Lukas Forer, Enis Afgan, Hansi Weißensteiner, Davor Davidovic, Günther Specht, Florian Kronenberg, Sebastian Schönherr

Proceedings of the 38th International Convention on Information and Communication Technology, 2015

Building and provisioning bioinformatics environments on public and private Clouds.

Enis Afgan, Konstantinos Krampis, Nuwan Goonasekera, Karolj Skala, James Taylor

Proceedings of the 38th International Convention on Information and Communication Technology, 2015

2014

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Steffen Möller, Enis Afgan, Michael Banck, Raoul Jean Pierre Bonnal, Timothy Booth, John Chilton, Peter J. A. Cock, Markus Gumbel, Nomi L. Harris, Richard C. G. Holland, Matús Kalas, László Kaján, Eri Kibukawa, David R. Powell, Pjotr Prins, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi, Torsten Seemann, Clare Sloggett, Stian Soiland-Reyes, William Spooner, Sascha Steinbiss, Andreas Tille, Anthony J. Travis, Roman Guimera, Toshiaki Katayama, Brad A. Chapman

BMC Bioinform., 2014

BioBlend.objects: metacomputing with Galaxy.

Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti

Bioinform., 2014

Galaxy cluster to cloud - genomics at scale.

Enis Afgan, Dannon Baker, John Chilton, Nathan Coraor, James Taylor

Proceedings of the 9th Gateway Computing Environments Workshop, 2014

Delivering bioinformatics MapReduce applications in the cloud.

Lukas Forer, Tomislav Lipic, Sebastian Schönherr, Hansi Weißensteiner, Davor Davidovic, Florian Kronenberg, Enis Afgan

Proceedings of the 37th International Convention on Information and Communication Technology, 2014

2013

Impact of 3D Graphic Structure Complexity to the Rendering Time.

Tibor Skala, Karolj Skala, Enis Afgan

J. Circuits Syst. Comput., 2013

BioBlend: automating pipeline analyses within Galaxy and CloudMan.

Clare Sloggett, Nuwan Goonasekera, Enis Afgan

Bioinform., 2013

2012

Scheduling and planning job execution of loosely coupled applications.

Enis Afgan, Purushotham V. Bangalore, Tibor Skala

J. Supercomput., 2012

A reference model for deploying applications in virtualized environments.

Enis Afgan, Dannon Baker, Anton Nekrutenko, James Taylor

Concurr. Comput. Pract. Exp., 2012

CloudMan as a platform for tool, data, and analysis distribution.

Enis Afgan, Brad Chapman, James Taylor

BMC Bioinform., 2012

CloudMan as a tool execution framework for the cloud.

Enis Afgan, Karolj Skala, Davor Davidovic, Tomislav Lipic, Ivan Sovic

Proceedings of the 2012 Proceedings of the 35th International Convention, 2012

Bio-Linux as a tool for bioinformatics training.

Timothy Booth, Mesude Bicak, Hyun Soon Gweon, Dawn Field, Enis Afgan

Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011

Galaxy: A Gateway to Tools in e-Science.

Enis Afgan, Jeremy Goecks, Dannon Baker, Nate Coraor, Anton Nekrutenko, James Taylor

Proceedings of the Guide to e-Science, Next Generation Scientific Research and Discovery, 2011

Application Information Services for distributed computing environments.

Enis Afgan, Purushotham V. Bangalore, Karolj Skala

Future Gener. Comput. Syst., 2011

2010

Exploiting performance characterization of BLAST in the grid.

Enis Afgan, Purushotham V. Bangalore

Clust. Comput., 2010

Galaxy CloudMan: delivering cloud compute clusters.

Enis Afgan, Dannon Baker, Nathan Coraor, Brad Chapman, Anton Nekrutenko, James Taylor

BMC Bioinform., 2010

2009

GridAtlas - A grid application and resource configuration repository and discovery service.

Enis Afgan, Purushotham V. Bangalore, Dustin Duncan

Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

2008

Embarrassingly parallel jobs are not embarrassingly easy to schedule on the grid.

Enis Afgan, Purushotham V. Bangalore

Proceedings of the 2008 Workshop on Many-Task Computing on Grids and Supercomputers, 2008

A common application platform for the SURAgrid (CAP).

Mahantesh Halappanavar, John-Paul Robinson, Enis Afgan, Mary Fran Yafchak, Purushotham V. Bangalore

Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key capabilities, Baton Rouge, Louisiana, USA, January 29, 2008

Experiences with developing and deploying dynamic BLAST.

Enis Afgan, Purushotham V. Bangalore

Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key capabilities, Baton Rouge, Louisiana, USA, January 29, 2008

G-BLAST: A Grid Service for BLAST.

Purushotham V. Bangalore, Enis Afgan

Proceedings of the 2008 International Conference on Grid Computing & Applications, 2008

2007

Using Domain-Specific Modeling to Generate User Interfaces for Wizards.

Enis Afgan, Jeffrey G. Gray, Purushotham V. Bangalore

Proceedings of the MoDELS 2007 Workshop on Model Driven Development of Advanced User Interfaces, 2007

Application Specification Language (ASL) - A Language for Describing Applications in Grid Computing.

Enis Afgan, Purushotham V. Bangalore

Proceedings of the Grid Service Engineering and Management: The 4th International Conference on Grid Service Engineering and Management, 2007

Performance Characterization of BLAST for the Grid.

Enis Afgan, Purushotham V. Bangalore

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Dynamic Task Distribution in the Grid for BLAST.

Enis Afgan, Pavithran Sathyanarayana, Purushotham V. Bangalore

Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Design, development and usage of a generic job submission grid service.

Enis Afgan, William T. Jones

Proceedings of the 44st Annual Southeast Regional Conference, 2006

2005

Grid Resource Broker Using Application Benchmarking.

Enis Afgan, Vijay Velusamy, Purushotham V. Bangalore

Proceedings of the Advances in Grid Computing, 2005

2004

Role of the resource broker in the Grid.

Enis Afgan

Proceedings of the 42nd Annual Southeast Regional Conference, 2004