Ender Konukoglu

Orcid: 0000-0002-2542-3611

According to our database1, Ender Konukoglu authored at least 143 papers between 2004 and 2024.

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Bibliography

2024
Federated Feature Augmentation and Alignment.
IEEE Trans. Pattern Anal. Mach. Intell., December, 2024

Editorial for the Special Issue on the 2022 Medical Imaging with Deep Learning Conference.
Medical Image Anal., 2024

Multimodality Helps Few-Shot 3D Point Cloud Semantic Segmentation.
CoRR, 2024

When SAM2 Meets Video Camouflaged Object Segmentation: A Comprehensive Evaluation and Adaptation.
CoRR, 2024

Do Vision Foundation Models Enhance Domain Generalization in Medical Image Segmentation?
CoRR, 2024

Image Segmentation in Foundation Model Era: A Survey.
CoRR, 2024

ShapeSplat: A Large-scale Dataset of Gaussian Splats and Their Self-Supervised Pretraining.
CoRR, 2024

Implicit-Zoo: A Large-Scale Dataset of Neural Implicit Functions for 2D Images and 3D Scenes.
CoRR, 2024

Uncertainty modeling for fine-tuned implicit functions.
CoRR, 2024

QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge.
CoRR, 2024

Energy-Based Prior Latent Space Diffusion Model for Reconstruction of Lumbar Vertebrae from Thick Slice MRI.
Proceedings of the Deep Generative Models - 4th MICCAI Workshop, 2024

Vision-Based Neurosurgical Guidance: Unsupervised Localization and Camera-Pose Prediction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

2023
InOR-Net: Incremental 3-D Object Recognition Network for Point Cloud Representation.
IEEE Trans. Neural Networks Learn. Syst., October, 2023

Volumetric memory network for interactive medical image segmentation.
Medical Image Anal., 2023

Local contrastive loss with pseudo-label based self-training for semi-supervised medical image segmentation.
Medical Image Anal., 2023

InOR-Net: Incremental 3D Object Recognition Network for Point Cloud Representation.
CoRR, 2023

Wiener Guided DIP for Unsupervised Blind Image Deconvolution.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2023

Expert load matters: operating networks at high accuracy and low manual effort.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Canonical normalizing flows for manifold learning.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

MultiVT: Multiple-Task Framework for Dentistry.
Proceedings of the Domain Adaptation and Representation Transfer - 5th MICCAI Workshop, 2023

Live Image-Based Neurosurgical Guidance and Roadmap Generation Using Unsupervised Embedding.
Proceedings of the Information Processing in Medical Imaging, 2023

FedFA: Federated Feature Augmentation.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

Explicitly Minimizing the Blur Error of Variational Autoencoders.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

Outlier Detection in ECG.
Proceedings of the Computing in Cardiology, 2023

2022
Sampling Possible Reconstructions of Undersampled Acquisitions in MR Imaging With a Deep Learned Prior.
IEEE Trans. Medical Imaging, 2022

Unsupervised Superpixel Generation using Edge-Sparse Embedding.
CoRR, 2022

Neural Vector Fields for Surface Representation and Inference.
CoRR, 2022

A Field of Experts Prior for Adapting Neural Networks at Test Time.
CoRR, 2022

A 2.5D convolutional neural network for HPV prediction in advanced oropharyngeal cancer.
Comput. Biol. Medicine, 2022

Quantification of Predictive Uncertainty via Inference-Time Sampling.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2022

Diagnostic Accuracy and Reliability of Deep Learning-Based Human Papillomavirus Status Prediction in Oropharyngeal Cancer.
Proceedings of 2022 International Conference on Medical Imaging and Computer-Aided Diagnosis, 2022

Zero Pixel Directional Boundary by Vector Transform.
Proceedings of the Tenth International Conference on Learning Representations, 2022

Rethinking Semantic Segmentation: A Prototype View.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

ISNAS-DIP: Image-Specific Neural Architecture Search for Deep Image Prior.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

2021
Test-time adaptable neural networks for robust medical image segmentation.
Medical Image Anal., 2021

Normative ascent with local gaussians for unsupervised lesion detection.
Medical Image Anal., 2021

Semi-supervised task-driven data augmentation for medical image segmentation.
Medical Image Anal., 2021

Gradient flow encoding with distance optimization adaptive step size.
CoRR, 2021

Constrained Optimization for Training Deep Neural Networks Under Class Imbalance.
CoRR, 2021

Hyperspectral Image Super-Resolution with Spectral Mixup and Heterogeneous Datasets.
CoRR, 2021

Constrained Optimization to Train Neural Networks on Critical and Under-Represented Classes.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

The OOD Blind Spot of Unsupervised Anomaly Detection.
Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021

Quality-Aware Memory Network for Interactive Volumetric Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

High-Resolution Segmentation of Lumbar Vertebrae from Conventional Thick Slice MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Contrastive Learning of Single-Cell Phenotypic Representations for Treatment Classification.
Proceedings of the Machine Learning in Medical Imaging - 12th International Workshop, 2021

Task-Agnostic Out-of-Distribution Detection Using Kernel Density Estimation.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis, 2021

Exploring Cross-Image Pixel Contrast for Semantic Segmentation.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

Lessons Learned from the Development and Application of Medical Imaging-Based AI Technologies for Combating COVID-19: Why Discuss, What Next.
Proceedings of the Clinical Image-Based Procedures, Distributed and Collaborative Learning, Artificial Intelligence for Combating COVID-19 and Secure and Privacy-Preserving Machine Learning, 2021

2020
Unsupervised lesion detection via image restoration with a normative prior.
Medical Image Anal., 2020

Sampling possible reconstructions of undersampled acquisitions in MR imaging.
CoRR, 2020

Semi-supervised Task-driven Data Augmentation for Medical Image Segmentation.
CoRR, 2020

Unsupervised out-of-distribution detection using kernel density estimation.
CoRR, 2020

Test-Time Adaptable Neural Networks for Robust Medical Image Segmentation.
CoRR, 2020

Automated quantification of myocardial tissue characteristics from native T1 mapping using neural networks with Bayesian inference for uncertainty-based quality-control.
CoRR, 2020

Contrastive learning of global and local features for medical image segmentation with limited annotations.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Modelling the Distribution of 3D Brain MRI Using a 2D Slice VAE.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Probabilistic 3D Surface Reconstruction from Sparse MRI Information.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

RevPHiSeg: A Memory-Efficient Neural Network for Uncertainty Quantification in Medical Image Segmentation.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis, 2020

Joint Reconstruction and Bias Field Correction for Undersampled MR Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Decomposing Image Generation into Layout Prediction and Conditional Synthesis.
Proceedings of the 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020

2019
MR Image Reconstruction Using Deep Density Priors.
IEEE Trans. Medical Imaging, 2019

An image interpolation approach for acquisition time reduction in navigator-based 4D MRI.
Medical Image Anal., 2019

Morpho-MNIST: Quantitative Assessment and Diagnostics for Representation Learning.
J. Mach. Learn. Res., 2019

Machine Learning with Multi-Site Imaging Data: An Empirical Study on the Impact of Scanner Effects.
CoRR, 2019

Medical Imaging with Deep Learning: MIDL 2019 - Extended Abstract Track.
CoRR, 2019

Adversarial Augmentation for Enhancing Classification of Mammography Images.
CoRR, 2019

Unsupervised Lesion Detection with Locally Gaussian Approximation.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

PHiSeg: Capturing Uncertainty in Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Semi-supervised and Task-Driven Data Augmentation.
Proceedings of the Information Processing in Medical Imaging, 2019

Synchrotron X-Ray Phase Contrast Imaging and Deep Neural Networks for Cardiac Collagen Quantification in Hypertensive Rat Model.
Proceedings of the Functional Imaging and Modeling of the Heart, 2019

2018
Reducing Navigators in Free-Breathing Abdominal MRI via Temporal Interpolation Using Convolutional Neural Networks.
IEEE Trans. Medical Imaging, 2018

eCurves: A Temporal Shape Encoding.
IEEE Trans. Biomed. Eng., 2018

as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity.
NeuroImage, 2018

Reconstructing subject-specific effect maps.
NeuroImage, 2018

Sparse-then-dense alignment-based 3D map reconstruction method for endoscopic capsule robots.
Mach. Vis. Appl., 2018

Deep EndoVO: A recurrent convolutional neural network (RCNN) based visual odometry approach for endoscopic capsule robots.
Neurocomputing, 2018

Injecting and removing malignant features in mammography with CycleGAN: Investigation of an automated adversarial attack using neural networks.
CoRR, 2018

Generative Adversarial Networks for MR-CT Deformable Image Registration.
CoRR, 2018

Deep Generative Models in the Real-World: An Open Challenge from Medical Imaging.
CoRR, 2018

Unsupervised Detection of Lesions in Brain MRI using constrained adversarial auto-encoders.
CoRR, 2018

Temporal Interpolation via Motion Field Prediction.
CoRR, 2018

Uncertainty Quantification in CNN-Based Surface Prediction Using Shape Priors.
Proceedings of the Shape in Medical Imaging, 2018

Combining Heterogeneously Labeled Datasets For Training Segmentation Networks.
Proceedings of the Machine Learning in Medical Imaging - 9th International Workshop, 2018

A Lifelong Learning Approach to Brain MR Segmentation Across Scanners and Protocols.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Learning to Segment Medical Images with Scribble-Supervision Alone.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Iterative Interaction Training for Segmentation Editing Networks.
Proceedings of the Machine Learning in Medical Imaging - 9th International Workshop, 2018

Visual Feature Attribution Using Wasserstein GANs.
Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition, 2018

2017
A deep learning based fusion of RGB camera information and magnetic localization information for endoscopic capsule robots.
Int. J. Intell. Robotics Appl., 2017

A non-rigid map fusion-based direct SLAM method for endoscopic capsule robots.
Int. J. Intell. Robotics Appl., 2017

MR image reconstruction using the learned data distribution as prior.
CoRR, 2017

A fully dense and globally consistent 3D map reconstruction approach for GI tract to enhance therapeutic relevance of the endoscopic capsule robot.
CoRR, 2017

A Deep Learning Based 6 Degree-of-Freedom Localization Method for Endoscopic Capsule Robots.
CoRR, 2017

Six Degree-of-Freedom Localization of Endoscopic Capsule Robots using Recurrent Neural Networks embedded into a Convolutional Neural Network.
CoRR, 2017

A Non-Rigid Map Fusion-Based RGB-Depth SLAM Method for Endoscopic Capsule Robots.
CoRR, 2017

SubCMap: Subject and Condition Specific Effect Maps.
CoRR, 2017

Permutation tests for classification: revisited.
Proceedings of the 2017 International Workshop on Pattern Recognition in Neuroimaging, 2017

Temporal Interpolation of Abdominal MRIs Acquired During Free-Breathing.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

An Exploration of 2D and 3D Deep Learning Techniques for Cardiac MR Image Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges, 2017

2016
Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease.
NeuroImage, 2016

Constructing Subject- and Disease-Specific Effect Maps: Application to Neurodegenerative Diseases.
Proceedings of the Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging, 2016

Correction of Fat-Water Swaps in Dixon MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

2015
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).
IEEE Trans. Medical Imaging, 2015

Clinical Prediction from Structural Brain MRI Scans: A Large-Scale Empirical Study.
Neuroinformatics, 2015

Relevant feature set estimation with a knock-out strategy and random forests.
NeuroImage, 2015

2014
Approximate False Positive Rate Control in Selection Frequency for Random Forest.
CoRR, 2014

2013
WESD-Weighted Spectral Distance for Measuring Shape Dissimilarity.
IEEE Trans. Pattern Anal. Mach. Intell., 2013

Neighbourhood approximation using randomized forests.
Medical Image Anal., 2013

Regression forests for efficient anatomy detection and localization in computed tomography scans.
Medical Image Anal., 2013

Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

On Feature Relevance in Image-Based Prediction Models: An Empirical Study.
Proceedings of the Machine Learning in Medical Imaging - 4th International Workshop, 2013

Is Synthesizing MRI Contrast Useful for Inter-modality Analysis?
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

2012
Discriminative Segmentation-Based Evaluation Through Shape Dissimilarity.
IEEE Trans. Medical Imaging, 2012

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning.
Found. Trends Comput. Graph. Vis., 2012

Decision Forests for Tissue-Specific Segmentation of High-Grade Gliomas in Multi-channel MR.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Neighbourhood Approximation Forests.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Temporal Shape Analysis via the Spectral Signature.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Joint Classification-Regression Forests for Spatially Structured Multi-object Segmentation.
Proceedings of the Computer Vision - ECCV 2012, 2012

2011
Spatial decision forests for MS lesion segmentation in multi-channel magnetic resonance images.
NeuroImage, 2011

A multi-front eikonal model of cardiac electrophysiology for interactive simulation of radio-frequency ablation.
Comput. Graph., 2011

Robust linear registration of CT images using random regression forests.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

A Generative Approach for Image-Based Modeling of Tumor Growth.
Proceedings of the Information Processing in Medical Imaging, 2011

Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active Learning.
Proceedings of the Information Processing in Medical Imaging, 2011

2010
Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations.
IEEE Trans. Medical Imaging, 2010

Extrapolating glioma invasion margin in brain magnetic resonance images: Suggesting new irradiation margins.
Medical Image Anal., 2010

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

2009
Modeling Glioma Growth and Personalizing Growth Models in Medical Images. (Modélisation de la croissance des gliomes et personnalisation des modéles de croissance à l'aide d'images médicales).
PhD thesis, 2009

2008
Monitoring slowly evolving tumors.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
Polyp Enhancing Level Set Evolution of Colon Wall: Method and Pilot Study.
IEEE Trans. Medical Imaging, 2007

HDF: Heat diffusion fields for polyp detection in CT colonography.
Signal Process., 2007

Computational Brain Tumours.
ERCIM News, 2007

Towards an Identification of Tumor Growth Parameters from Time Series of Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling.
Proceedings of the Information Processing in Medical Imaging, 2007

An Anisotropic Multi-front Fast Marching Method for Real-Time Simulation of Cardiac Electrophysiology.
Proceedings of the Functional Imaging and Modeling of the Heart, 2007

2006
Shape-Based Hand Recognition.
IEEE Trans. Image Process., 2006

Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

2005
Heat diffusion based detection of colonic polyps in CT colonography.
Proceedings of the 13th European Signal Processing Conference, 2005

2004
Person authentication based on hand shape.
Proceedings of the 2004 12th European Signal Processing Conference, 2004


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