Emily R. Miraldi

According to our database, Emily R. Miraldi authored at least 5 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.

Tareian A. Cazares, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani, Joseph A. Wayman, Omer Donmez, Benjamin Wronowski, Sreeja Parameswaran, Leah C. Kottyan, Artem Barski, Matthew T. Weirauch, V. B. Surya Prasath, Emily R. Miraldi

PLoS Comput. Biol., January, 2023

2019

Multi-study inference of regulatory networks for more accurate models of gene regulation.

Dayanne M. Castro, Nicholas R. de Veaux, Emily R. Miraldi, Richard Bonneau

PLoS Comput. Biol., 2019

2016

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.

Ramya Raviram, Pedro P. Rocha, Christian L. Müller, Emily R. Miraldi, Sana Badri, Yi Fu, Emily Swanzey, Charlotte Proudhon, Valentina Snetkova, Richard Bonneau, Jane A. Skok

PLoS Comput. Biol., 2016

2015

Sparse and Compositionally Robust Inference of Microbial Ecological Networks.

Zachary D. Kurtz, Christian L. Müller, Emily R. Miraldi, Dan R. Littman, Martin J. Blaser, Richard A. Bonneau

PLoS Comput. Biol., 2015

2014

Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks.

Bowen Yu, Harish Doraiswamy, Xi Chen, Emily R. Miraldi, Mario Luis Arrieta-Ortiz, Christoph Hafemeister, Aviv Madar, Richard Bonneau, Cláudio T. Silva

IEEE Trans. Vis. Comput. Graph., 2014