Emilie Pasche

Orcid: 0000-0002-9118-5762

According to our database1, Emilie Pasche authored at least 46 papers between 2009 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
Comparing Sequence-Based and Literature-Based Pathogenicity Scoring Methods for Human Variants.
Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

2023
Assessing the use of supplementary materials to improve genomic variant discovery.
Database J. Biol. Databases Curation, 2023

2022
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

2021
SIB Text Mining at TREC Clinical Trials 2021.
Proceedings of the Thirtieth Text REtrieval Conference, 2021

2020
DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res., 2020

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts.
Nucleic Acids Res., 2020

UPCLASS: a deep learning-based classifier for UniProtKB entry publications.
Database J. Biol. Databases Curation, 2020

SIB Text Mining at TREC Precision Medicine 2020.
Proceedings of the Twenty-Ninth Text REtrieval Conference, 2020

Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

2019
Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts.
Proceedings of the Working Notes of CLEF 2019, 2019

Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2019

2018
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.
Database J. Biol. Databases Curation, 2018

2017
Triage by ranking to support the curation of protein interactions.
Database J. Biol. Databases Curation, 2017

Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

2016
neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt.
Database J. Biol. Databases Curation, 2016

BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction.
Proceedings of the Working Notes of CLEF 2016, 2016

2015
Deep Question Answering for protein annotation.
Database J. Biol. Databases Curation, 2015

2014
Development and tuning of an original search engine for patent libraries in medicinal chemistry.
BMC Bioinform., 2014

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification.
Database J. Biol. Databases Curation, 2014

Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track.
Proceedings of The Twenty-Third Text REtrieval Conference, 2014

DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

2013
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.
Database J. Biol. Databases Curation, 2013

Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks.
Proceedings of the MEDINFO 2013, 2013

Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature.
Proceedings of the Data and Knowledge for Medical Decision Support, 2013

2012
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation, 2012

Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database.
Proceedings of the Quality of Life through Quality of Information, 2012

An advanced search engine for patent analytics in medicinal chemistry.
Proceedings of the Quality of Life through Quality of Information, 2012

Pathogens and Gene Product Normalization in the Biomedical Literature.
Proceedings of the Large Scale Projects in eHealth, 2012

A User-Friendly Tool for Medical-Related Patent Retrieval.
Proceedings of the Large Scale Projects in eHealth, 2012

2011
BiTeM Group Report for TREC Medical Records Track 2011.
Proceedings of The Twentieth Text REtrieval Conference, 2011

BiTeM Group Report for TREC Chemical IR Track 2011.
Proceedings of The Twentieth Text REtrieval Conference, 2011

Interoperability Driven Integration of Biomedical Data Sources.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Using Multimodal Mining to Drive Clinical Guidelines Development.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

2010
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval.
Proceedings of The Nineteenth Text REtrieval Conference, 2010

Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining.
Proceedings of the 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, 2010

The Information Quality Triangle: A methodology to assess Clinical Information quality.
Proceedings of the MEDINFO 2010, 2010

Partage de Données Biomédicales sur le Web Sémantique.
Proceedings of the Web Sémantique Médical workshop, 2010

Un modèle de connaissances pour mesurer la qualité d'une source d'information.
Proceedings of the IC 2010 : 21es Journées Ingénierie des Connaissances 2010 (Proceedings of the 21st French Knowledge Engineering Conference), 2010

Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10.
Proceedings of the CLEF 2010 LABs and Workshops, 2010

2009
Report on the TREC 2009 Experiments: Chemical IR Track.
Proceedings of The Eighteenth Text REtrieval Conference, 2009

Biomedical Data Management: A Proposal Framework.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Automatic Medical Knowledge Acquisition Using Question-Answering.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009.
Proceedings of the Multilingual Information Access Evaluation I. Text Retrieval Experiments, 2009

QA-driven Guidelines Generation for Bacteriotherapy.
Proceedings of the AMIA 2009, 2009


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