Elena Papaleo

According to our database, Elena Papaleo authored at least 16 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks.

Mona Nourbakhsh, Kristine Degn, Astrid Saksager, Matteo Tiberti, Elena Papaleo

Briefings Bioinform., January, 2024

2023

PDBminer to Find and Annotate Protein Structures for Computational Analysis.

Kristine Degn, Ludovica Beltrame, Matteo Tiberti, Elena Papaleo

J. Chem. Inf. Model., December, 2023

A workflow to study mechanistic indicators for driver gene prediction with Moonlight.

Mona Nourbakhsh, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo

Briefings Bioinform., September, 2023

PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles.

Valentina Sora, Matteo Tiberti, Ludovica Beltrame, Deniz Dogan, Shahriyar Mahdi Robbani, Joshua Rubin, Elena Papaleo

J. Chem. Inf. Model., July, 2023

2022

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.

Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2022

MutateX: an automated pipeline for <i>in silico</i> saturation mutagenesis of protein structures and structural ensembles.

Matteo Tiberti, Thilde Terkelsen, Kristine Degn, Ludovica Beltrame, Tycho Canter Cremers, Isabelle da Piedade, Miriam Di Marco, Emiliano Maiani, Elena Papaleo

Briefings Bioinform., 2022

2020

CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data.

Thilde Terkelsen, Anders Krogh, Elena Papaleo

PLoS Comput. Biol., 2020

DisProt: intrinsic protein disorder annotation in 2020.

András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2020

2019

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.

Mohamed Mounir, Marta Lucchetta, Tiago Chedraoui Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo

PLoS Comput. Biol., 2019

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level.

Simon Mathis Kønig, Vendela Rissler, Thilde Terkelsen, Matteo Lambrughi, Elena Papaleo

PLoS Comput. Biol., 2019

2015

ENCORE: Software for Quantitative Ensemble Comparison.

Matteo Tiberti, Elena Papaleo, Tone Bengtsen, Wouter Boomsma, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2015

2014

Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops.

Gaetano Invernizzi, Matteo Tiberti, Matteo Lambrughi, Kresten Lindorff-Larsen, Elena Papaleo

PLoS Comput. Biol., 2014

PyInteraph: A Framework for the Analysis of Interaction Networks in Structural Ensembles of Proteins.

Matteo Tiberti, Gaetano Invernizzi, Matteo Lambrughi, Yuval Inbar, Gideon Schreiber, Elena Papaleo

J. Chem. Inf. Model., 2014

2012

xPyder: A PyMOL Plugin To Analyze Coupled Residues and Their Networks in Protein Structures.

Marco Pasi, Matteo Tiberti, Alberto Arrigoni, Elena Papaleo

J. Chem. Inf. Model., 2012

2011

An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes.

Elena Papaleo, Valeria Ranzani, Farida Tripodi, Alessandro Vitriolo, Claudia Cirulli, Piercarlo Fantucci, Lilia Alberghina, Marco Vanoni, Luca De Gioia, Paola Coccetti

PLoS Comput. Biol., 2011

2008

Validation of protein models by a neural network approach.

Paolo Mereghetti, Maria Luisa Ganadu, Elena Papaleo, Piercarlo Fantucci, Luca De Gioia

BMC Bioinform., 2008