Elaine R. Mardis

According to our database, Elaine R. Mardis authored at least 15 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of two.

2024

SNVstory: inferring genetic ancestry from genome sequencing data.

Audrey E. Bollas, Andrei Rajkovic, Defne Ceyhan, Jeffrey B. Gaither, Elaine R. Mardis, Peter White

BMC Bioinform., December, 2024

2023

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.

Kilannin Krysiak, Arpad M. Danos, Jason Saliba, Joshua F. McMichael, Adam C. Coffman, Susanna Kiwala, Erica K. Barnell, Lana Sheta, Cameron J. Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Sarah Ridd, Nicholas C. Spies, Veronica Andric, Andreea Chiorean, Damian Tobias Rieke, Kaitlin A. Clark, Caralyn Reisle, Ajay C. Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horák, Deborah i Ritter, Xin Zhou, Benjamin J. Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen, Alex Marr, My Hoang, Kartik Singhal, Mariam Khanfar, Brian V. Li, Wan-Hsin Lin, Panieh Terraf, Laura B. Corson, Yasser Salama, Katie M. Campbell, Kirsten M. Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C. Cotto, Zachary L. Skidmore, Jason R. Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y. Patel, Rachel H. Giles, Raymond H. Kim, Lynn M. Schriml, Elaine R. Mardis, Steven J. M. Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H. Wagner, Malachi Griffith, Obi L. Griffith

Nucleic Acids Res., January, 2023

2017

INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.

Jin Zhang, Elaine R. Mardis, Christopher A. Maher

Bioinform., 2017

2016

DGIdb 2.0: mining clinically relevant drug-gene interactions.

Alex H. Wagner, Adam C. Coffman, Benjamin J. Ainscough, Nicholas C. Spies, Zachary L. Skidmore, Katie M. Campbell, Kilannin Krysiak, Deng Pan, Joshua F. McMichael, James M. Eldred, Jason R. Walker, Richard K. Wilson, Elaine R. Mardis, Malachi Griffith, Obi L. Griffith

Nucleic Acids Res., 2016

2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

Malachi Griffith, Obi L. Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam C. Coffman, Allison A. Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, Robert L. Long, Travis E. Abbott, Ian T. Ferguson, David L. Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William S. Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher C. Harris, Nicole Maher, Christopher A. Maher, Vincent J. Magrini, Benjamin S. Abbott, Ken Chen, Eric Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd N. Wylie, Shawn M. Leonard, William E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig S. Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason R. Walker, James M. Eldred, David E. Larson, David J. Dooling, Li Ding, Elaine R. Mardis, Richard K. Wilson

PLoS Comput. Biol., 2015

2014

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution.

Christopher A. Miller, Brian S. White, Nathan D. Dees, Malachi Griffith, John S. Welch, Obi L. Griffith, Ravi Vij, Michael H. Tomasson, Timothy A. Graubert, Matthew J. Walter, Matthew J. Ellis, William S. Schierding, John F. DiPersio, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding

PLoS Comput. Biol., 2014

2012

SomaticSniper: identification of somatic point mutations in whole genome sequencing data.

David E. Larson, Christopher C. Harris, Ken Chen, Daniel C. Koboldt, Travis E. Abbott, David J. Dooling, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding

Bioinform., 2012

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.

Ken Chen, John W. Wallis, Cyriac Kandoth, Joelle M. Kalicki-Veizer, Karen L. Mungall, Andrew J. Mungall, Steven J. M. Jones, Marco A. Marra, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, John N. Weinstein, Li Ding

Bioinform., 2012

2011

PathScan: a tool for discerning mutational significance in groups of putative cancer genes.

Michael C. Wendl, John W. Wallis, Ling Lin, Cyriac Kandoth, Elaine R. Mardis, Richard K. Wilson, Li Ding

Bioinform., 2011

2010

CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.

Qunyuan Zhang, Li Ding, David E. Larson, Daniel C. Koboldt, Michael D. McLellan, Ken Chen, Xiaoqi Shi, Aldi T. Kraja, Elaine R. Mardis, Richard K. Wilson, Ingrid B. Borecki, Michael A. Province

Bioinform., 2010

Challenges of sequencing human genomes.

Daniel C. Koboldt, Li Ding, Elaine R. Mardis, Richard K. Wilson

Briefings Bioinform., 2010

2009

VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

Daniel C. Koboldt, Ken Chen, Todd Wylie, David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding

Bioinform., 2009

2008

<i>Gallus</i> GBrowse: a unified genomic database for the chicken.

Carl J. Schmidt, Michael Romanov, Oliver Ryder, Vincent J. Magrini, Matthew T. Hickenbotham, Jarret Glasscock, Sean McGrath, Elaine R. Mardis, Lincoln D. Stein

Nucleic Acids Res., 2008

2007

Design and implementation of a generalized laboratory data model.

Michael C. Wendl, Scott M. Smith, Craig S. Pohl, David J. Dooling, Asif T. Chinwalla, Kevin Crouse, Todd G. Hepler, Shin Leong, Lynn K. Carmichael, Mike Nhan, Benjamin J. Oberkfell, Elaine R. Mardis, LaDeana W. Hillier, Richard K. Wilson

BMC Bioinform., 2007

Extending assembly of short DNA sequences to handle error.

William R. Jeck, Josephine A. Reinhardt, David A. Baltrus, Matthew T. Hickenbotham, Vincent J. Magrini, Elaine R. Mardis, Jeffery L. Dangl, Corbin D. Jones

Bioinform., 2007