Edward C. Uberbacher

According to our database, Edward C. Uberbacher authored at least 29 papers between 1991 and 2016.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2016

MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression.

Steven W. Paugh, David R. Coss, Ju Bao, Lucas T. Laudermilk, Christy R. Grace, Antonio M. Ferreira, M. Brett Waddell, Granger Ridout, Deanna Naeve, Michael R. Leuze, Philip F. LoCascio, John C. Panetta, Mark R. Wilkinson, Ching-Hon Pui, Clayton W. Naeve, Edward C. Uberbacher, Erik J. Bonten, William E. Evans

PLoS Comput. Biol., 2016

2012

BESC knowledgebase public portal.

Mustafa H. Syed, Tatiana V. Karpinets, Morey Parang, Michael R. Leuze, Byung-Hoon Park, Doug Hyatt, Steven D. Brown, Steve Moulton, Michael D. Galloway, Edward C. Uberbacher

Bioinform., 2012

Gene and translation initiation site prediction in metagenomic sequences.

Doug Hyatt, Philip F. LoCascio, Loren J. Hauser, Edward C. Uberbacher

Bioinform., 2012

2010

<i>Shewanella</i> knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.

Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher

Database J. Biol. Databases Curation, 2010

2003

Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection.

Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher

Bioinform., 2003

Computing for the DOE Genomes to Life Program.

Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST.

Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

Stepping Up the Pace of Discovery: the Genomes to Life Program.

Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2000

Sequence-structure specificity of a knowledge based energy function at the secondary structure level.

Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher

Bioinform., 2000

1998

A segmentation algorithm for noisy images: Design and evaluation.

Ying Xu, Victor Olman, Edward C. Uberbacher

Pattern Recognit. Lett., 1998

An Efficient Computational Method for Globally Optimal Threading.

Ying Xu, Dong Xu, Edward C. Uberbacher

J. Comput. Biol., 1998

A new method for modeling and solving the protein fold recognition problem (extended abstract).

Ying Xu, Dong Xu, Edward C. Uberbacher

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

1997

Automated Gene Identification in Large-Scale Genomic Sequences.

Ying Xu, Edward C. Uberbacher

J. Comput. Biol., 1997

2D image segmentation using minimum spanning trees.

Ying Xu, Edward C. Uberbacher

Image Vis. Comput., 1997

Reference-based gene model prediction on DNA contigs (extended abstract).

Ying Xu, Edward C. Uberbacher

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags.

Ying Xu, Richard J. Mural, Edward C. Uberbacher

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1996

GRAIL: a multi-agent neural network system for gene identification.

Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher

Proc. IEEE, 1996

An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions.

Ying Xu, Richard J. Mural, Edward C. Uberbacher

J. Comput. Biol., 1996

Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence.

Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher

Comput. Chem., 1996

A polynomial-time algorithm for a class of protein threading problems.

Ying Xu, Edward C. Uberbacher

Comput. Appl. Biosci., 1996

Alignments of DNA and protein sequences containing frameshift errors.

Xiaojun Guan, Edward C. Uberbacher

Comput. Appl. Biosci., 1996

Gene Prediction by Pattern Recognition and Homology Search.

Ying Xu, Edward C. Uberbacher

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1995

Correcting sequencing errors in DNA coding regions using a dynamic programming approach.

Ying Xu, Richard J. Mural, Edward C. Uberbacher

Comput. Appl. Biosci., 1995

Predicting Protein Folding Classes without Overly Relying on Homology.

Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Sequence comparison on a cluster of workstations using the PVM system.

Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher

Proceedings of IPPS '95, 1995

Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation.

Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher

Proceedings of the Eighth Annual IEEE Symposium on Computer-Based Medical Systems (CBMS'95), 1995

1994

Constructing gene models from accurately predicted exons: an application of dynamic programming.

Ying Xu, Richard J. Mural, Edward C. Uberbacher

Comput. Appl. Biosci., 1994

An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence.

Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

1991

On Parallel Search of DNA Sequence Databases.

Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher

Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991