Edison Ong

According to our database, Edison Ong authored at least 30 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

mtx-COBRA: Subcellular localization prediction for bacterial proteins.

Isha Arora, Arkadij Kummer, Hao Zhou, Mihaela Gadjeva, Eric J. Ma, Gwo-Yu Chuang, Edison Ong

Comput. Biol. Medicine, 2024

2023

Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data.

Anthony Huffman, Edison Ong, Timothy Brunson, Nasim Sanati, Jie Zheng, Anna Maria Masci, Guanming Wu, Yongqun He

Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

2022

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith

J. Biomed. Semant., 2022

COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.

Anthony Huffman, Edison Ong, Junguk Hur, Adonis D'mello, Hervé Tettelin, Yongqun He

Briefings Bioinform., 2022

2021

Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.

Edison Ong, Michael F. Cooke, Anthony Huffman, Zuoshuang Xiang, Mei U. Wong, Haihe Wang, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He

Nucleic Acids Res., 2021

2020

Perform Pathway Enrichment Analysis Using ReactomeFIViz.

Robin Haw, Fred Loney, Edison Ong, Yongqun He, Guanming Wu

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens.

Edison Ong, Haihe Wang, Mei U. Wong, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He

Bioinform., 2020

CIDO: The Community-Based Coronavirus Infectious Disease Ontology.

Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He

Nucleic Acids Res., 2019

ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions.

Hong Yu, Solomiya Nysak, Noemi Garg, Edison Ong, Xianwei Ye, Xiangyan Zhang, Yongqun He

BMC Bioinform., 2019

VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.

Edison Ong, Peter Sun, Kimberly Berke, Jie Zheng, Guanming Wu, Yongqun He

BMC Bioinform., 2019

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

Yongqun He, William D. Duncan, Daniel J. Cooper, Jens Hansen, Ravi Iyengar, Edison Ong, Kendal Walker, Omar Tibi, Sam Smith, Lucas M. Serra, Jie Zheng, Sirarat Sarntivijai, Stephan C. Schürer, K. Sue O'Shea, Alexander D. Diehl

BMC Bioinform., 2019

ICDO: Ontological Representation of the International Classification of Diseases (ICD) and its Application in English and Chinese Healthy Data Standardization.

Ling Wan, Edison Ong, Yongqun He

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

Ontolion: A Web-based Integrative Ontology Development Platform.

Edison Ong, Yongqun He

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis.

Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O'Toole, Anastasios Siapos, Christian G. Reich, Sarah Seager, Ling Wang, Hong Yu, Jie Zheng, Christian J. Stoeckert Jr., Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar, Sean D. Mooney

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong

J. Biomed. Semant., 2018

eXtensible Ontology Development (XOD) using Web-based Ontoanimal Tools.

Edison Ong, Yongqun He, Jie Zheng

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration.

Yongqun He, Becky Steck, Edison Ong, Laura Mariani, Chrysta Lienczewski, Ulysses J. Balis, Matthias Kretzler, Jonathan Himmelfarb, John F. Bertram, Evren U. Azeloglu, Ravi Iyengar, Deborah Hoshizaki, Sean D. Mooney

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.

Edison Ong, Zuoshuang Xiang, Bin Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Mélanie Courtot, Alan Ruttenberg, Yongqun He

Nucleic Acids Res., 2017

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Edison Ong, Jiangan Xie, Zhaohui Ni, Qingping Liu, Sirarat Sarntivijai, Yu Lin, Daniel J. Cooper, Raymond Terryn, Vasileios Stathias, Caty Chung, Stephan C. Schürer, Yongqun He

BMC Bioinform., 2017

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

Edison Ong, Sirarat Sarntivijai, Simon Jupp, Helen E. Parkinson, Yongqun He

BMC Bioinform., 2017

OLOBO: A New Ontology for Linking and Integrating Open Biological and Biomedical Ontologies.

Edison Ong, Yongqun He

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

Towards precision informatics of pharmacovigilance: OAE-CTCAE mapping and OAE-based representation and analysis of adverse events in patients treated with cancer drugs.

Meiu Wong, Rebecca Racz, Edison Ong, Yongqun He

Proceedings of the AMIA 2017, 2017

2016

Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks.

Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion.

Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

The Cell Line Ontology Integration and Analysis of the Knowledge of LINCS Cell Lines.

Edison Ong, Jiangan Xie, Zhaohui Ni, Qingping Liu, Yu Lin, Vasileios Stathias, Caty Chung, Stephan C. Schürer, Yongqun He

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Application of Ontobedia on Cell Line Ontology Development.

Edison Ong, Yongqun He

Proceedings of the AMIA 2016, 2016

2015

A Scalable Method for Molecular Network Reconstruction Identifies Properties of Targets and Mutations in Acute Myeloid Leukemia.

Edison Ong, Anthony Szedlak, Yunyi Kang, Peyton Smith, Nicholas Smith, Madison McBride, Darren Finlay, Kristiina Vuori, James Mason, Edward D. Ball, Carlo Piermarocchi, Giovanni Paternostro

J. Comput. Biol., 2015

GOfox: Semantics-based simplified hierarchical classification and interactive visualization to support GO enrichment analysis.

Edison Ong, Yongqun He

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Prediction of kinase inhibitor response using activity profiling, in vitro screening, and elastic net regression.

Trish P. Tran, Edison Ong, Andrew P. Hodges, Giovanni Paternostro, Carlo Piermarocchi

BMC Syst. Biol., 2014