Edans Flavius de Oliveira Sandes

According to our database, Edans Flavius de Oliveira Sandes authored at least 25 papers between 2007 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning.

Marco Antonio C. de Figueiredo, João Paulo Navarro, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo

IEEE Trans. Parallel Distributed Syst., 2021

2020

Bitmap filter: Speeding up exact set similarity joins with bitwise operations.

Edans F. de O. Sandes, George Luiz Medeiros Teodoro, Alba C. M. A. Melo

Inf. Syst., 2020

Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning.

Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo

Proceedings of the 28th Euromicro International Conference on Parallel, 2020

2019

Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons.

Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo

J. Comput. Biol., 2019

MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL.

Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, Genaína Nunes Rodrigues, George Luiz Medeiros Teodoro, Alba Cristina Magalhaes Alves de Melo

Concurr. Comput. Pract. Exp., 2019

2018

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms.

Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter, Xavier Martorell, Eduard Ayguadé, Alba Cristina Magalhaes Alves de Melo

Comput. J., 2018

DNA sequences alignment in multi-GPUs: acceleration and energy payoff.

Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón

BMC Bioinform., 2018

2017

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis.

Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón

Proceedings of the Bioinformatics and Biomedical Engineering, 2017

Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands.

Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo

Proceedings of the Algorithms for Computational Biology, 2017

2016

CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters.

Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo

IEEE Trans. Parallel Distributed Syst., 2016

MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning.

Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo

ACM Trans. Parallel Comput., 2016

Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification.

Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo

ACM Comput. Surv., 2016

2015

Algoritmos paralelos exatos e otimizações para alinhamento de sequências biológicas longas em plataformas de alto desempenho.

Edans Flavius de Oliveira Sandes

PhD thesis, 2015

Parallel Megabase DNA Sequence Comparison with OpenCL.

Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo

Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015

2014

Querying dynamic communities in online social networks.

Li Weigang, Edans F. de O. Sandes, Jianya Zheng, Alba Cristina Magalhaes Alves de Melo, Lorna Uden

J. Zhejiang Univ. Sci. C, 2014

An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison.

Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha, Alba Cristina Magalhaes Alves de Melo

Expert Syst. Appl., 2014

Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs.

Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé

Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2014

CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters.

Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé

Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

2013

Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU.

Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo

IEEE Trans. Parallel Distributed Syst., 2013

A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome.

Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012

Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner.

Edans Flavius de Oliveira Sandes, Li Weigang, Alba Cristina Magalhaes Alves de Melo

Proceedings of the Web Information Systems Engineering - WISE 2012, 2012

Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm.

Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo, Yasuaki Ito

Proceedings of the Third International Conference on Networking and Computing, 2012

2011

Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space.

Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo

Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences.

Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo

Proceedings of the 15th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2010

2007

An exact parallel algorithm to compare very long biological sequences in clusters of workstations.

Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Edans Flavius de Oliveira Sandes, Mauricio Ayala-Rincón

Clust. Comput., 2007