Dustin Machi

According to our database, Dustin Machi authored at least 24 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread.

Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan Lewis, Henning S. Mortveit, Srinivasan Venkatramanan, Mandy L. Wilson, Achla Marathe, Przemyslaw J. Porebski, Brian Klahn, Joseph Outten, Anil Vullikanti, Dawen Xie, Abhijin Adiga, Shawn Brown, Christopher L. Barrett, Madhav V. Marathe

J. Parallel Distributed Comput., 2024

2023

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.

Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis, Donald M. Dempsey, Allan Dickerman, Emily M. Dietrich, Ronald W. Kenyon, Mehmet Kuscuoglu, Elliot J. Lefkowitz, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Maria Niewiadomska, Marcus Nguyen, Gary J. Olsen, Jamie C. Overbeek, Bruce D. Parrello, Victoria Parrello, Jacob s Porter, Gordon D. Pusch, Maulik Shukla, Indresh Singh, Lucy Stewart, Gene Tan, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Zachary S. Wallace, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo, Yun Zhang, Christian M. Zmasek, Richard H. Scheuermann, Rick L. Stevens

Nucleic Acids Res., January, 2023

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support.

Parantapa Bhattacharya, Jiangzhuo Chen, Stefan Hoops, Dustin Machi, Bryan L. Lewis, Srinivasan Venkatramanan, Mandy L. Wilson, Brian Klahn, Aniruddha Adiga, Benjamin Hurt, Joseph Outten, Abhijin Adiga, Andrew S. Warren, Young Yun Baek, Przemyslaw J. Porebski, Achla Marathe, Dawen Xie, Samarth Swarup, Anil Vullikanti, Henning S. Mortveit, Stephen G. Eubank, Christopher L. Barrett, Madhav Vinayak Marathe

Int. J. High Perform. Comput. Appl., 2023

A Network Synthesis and Analytics Pipeline with Applications to Sustainable Energy in Smart Grid.

Swapna Thorve, Aparna Kishore, Dustin Machi, S. S. Ravi, Madhav V. Marathe

Proceedings of the 19th IEEE International Conference on e-Science, 2023

2022

A Web-Based System for Contagion Simulations on Networked Populations.

Tanvir Ferdousi, Aparna Kishore, Lucas Machi, Dustin Machi, Chris J. Kuhlman, S. S. Ravi

Proceedings of the 18th IEEE International Conference on e-Science, 2022

2021

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.

Margo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug, Thomas S. Brettin, Emily M. Dietrich, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Robert Olson, Gordon D. Pusch, Maulik Shukla, Rick Stevens, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Hyun Seung Yoo, James J. Davis

Briefings Bioinform., 2021

CSonNet: An Agent-Based Modeling Software System for Discrete Time Simulation.

Joshua D. Priest, Aparna Kishore, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi

Proceedings of the Winter Simulation Conference, 2021

GraphTrans: A Software System for Network Conversions for Simulation, Structural Analysis, and Graph Operations.

Henry L. Carscadden, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi

Proceedings of the Winter Simulation Conference, 2021

ExecutionManager: A Software System to Control Execution of Third-Party Software that Performs Network Computations.

Henry L. Carscadden, Lucas Machi, Aparna Kishore, Chris J. Kuhlman, Dustin Machi, S. S. Ravi

Proceedings of the Winter Simulation Conference, 2021

Interactive Demonstrations and Hands-On Use of thenet.science Cyberinfrastructure for Network Science Chairs' Welcome and Tutorial Summary.

Golda Barrow, Chris J. Kuhlman, Dustin Machi, S. S. Ravi

Proceedings of the WebSci '21: 13th ACM Web Science Conference 2021, 2021

Scalable Epidemiological Workflows to Support COVID-19 Planning and Response.

Dustin Machi, Parantapa Bhattacharya, Stefan Hoops, Jiangzhuo Chen, Henning S. Mortveit, Srinivasan Venkatramanan, Bryan L. Lewis, Mandy L. Wilson, Arindam Fadikar, Tom Maiden, Christopher L. Barrett, Madhav V. Marathe

Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

A Framework for Simulating Multiple Contagions Over Multiple Networks.

Aparna Kishore, Lucas Machi, Chris J. Kuhlman, Dustin Machi, S. S. Ravi

Proceedings of the Complex Networks & Their Applications X - Volume 2, Proceedings of the Tenth International Conference on Complex Networks and Their Applications COMPLEX NETWORKS 2021, Madrid, Spain, November 30, 2021

AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US.

Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan L. Lewis, Henning S. Mortveit, Srinivasan Venkatramanan, Mandy L. Wilson, Achla Marathe, Przemyslaw J. Porebski, Brian Klahn, Joseph Outten, Anil Vullikanti, Dawen Xie, Abhijin Adiga, Shawn Brown, Christopher L. Barrett, Madhav V. Marathe

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020

Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework.

Vanessa Cedeno-Mieles, Zhihao Hu, Yihui Ren, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Noshir Contractor, Saliya Ekanayake, Joshua M. Epstein, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Michael W. Macy, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self

Soc. Netw. Anal. Min., 2020

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.

James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler, Philippe Chlenski, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard, Svetlana Gerdes, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Jamie C. Overbeek, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Dawen Xie, Hyun Seung Yoo, Rick Stevens

Nucleic Acids Res., 2020

From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 Surveillance.

Akhil Sai Peddireddy, Dawen Xie, Pramod Patil, Mandy L. Wilson, Dustin Machi, Srinivasan Venkatramanan, Brian Klahn, Przemyslaw J. Porebski, Parantapa Bhattacharya, Shirish Dumbre, Erin Raymond, Madhav V. Marathe

Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

2019

PATRIC as a unique resource for studying antimicrobial resistance.

Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla, Rick L. Stevens, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo

Briefings Bioinform., 2019

On the Modeling and Agent-Based Simulation of a Cooperative Group Anagram Game.

Zhihao Hu, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Yihui Ren, Vanessa Cedeno-Mieles, Saliya Ekanayake, Xinwei Deng, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Abhijin Adiga, Gizem Korkmaz, Chris J. Kuhlman

Proceedings of the 2019 Winter Simulation Conference, 2019

Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games.

Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Yihui Ren, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the ASONAM '19: International Conference on Advances in Social Networks Analysis and Mining, 2019

2018

Pipelines and their Compositions for Modeling and Analysis of controlled Online Networked Social Science Experiments.

Vanessa Cedeno-Mieles, Yihui Ren, Saliya Ekanayake, Brian J. Goode, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Henning S. Mortveit, Zhihao Hu, Xinwei Deng, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the 2018 Winter Simulation Conference, 2018

Generative Modeling of Human Behavior and Social Interactions Using Abductive Analysis.

Yihui Ren, Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the IEEE/ACM 2018 International Conference on Advances in Social Networks Analysis and Mining, 2018

2017

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard, Svetlana Gerdes, Christopher S. Henry, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Gary J. Olsen, Daniel E. Murphy-Olson, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Hyun Seung Yoo, Rick L. Stevens

Nucleic Acids Res., 2017

2015

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.

Andrew S. Warren, Cristina Aurrecoechea, Brian P. Brunk, Prerak Desai, Scott J. Emrich, Gloria I. Giraldo-Calderón, Omar S. Harb, Deborah Hix, Daniel Lawson, Dustin Machi, Chunhong Mao, Michael McClelland, Eric K. Nordberg, Maulik Shukla, Leslie B. Vosshall, Alice R. Wattam, Rebecca Will, Hyun Seung Yoo, Bruno W. S. Sobral

Bioinform., 2015

2014

PATRIC, the bacterial bioinformatics database and analysis resource.

Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph J. Gillespie, Roger Gough, Deborah Hix, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Robert Olson, Ross A. Overbeek, Gordon D. Pusch, Maulik Shukla, Julie Schulman, Rick L. Stevens, Daniel E. Sullivan, Veronika Vonstein, Andrew S. Warren, Rebecca Will, Meredith J. C. Wilson, Hyun Seung Yoo, Chengdong Zhang, Yan Zhang, Bruno W. S. Sobral

Nucleic Acids Res., 2014