Dongyu Xue

According to our database, Dongyu Xue authored at least 8 papers between 2021 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

ProteinWeaver: A Divide-and-Assembly Approach for Protein Backbone Design.

Yiming Ma, Fei Ye, Yi Zhou, Zaixiang Zheng, Dongyu Xue, Quanquan Gu

CoRR, 2024

DPLM-2: A Multimodal Diffusion Protein Language Model.

Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, Shujian Huang, Quanquan Gu

CoRR, 2024

ProteinBench: A Holistic Evaluation of Protein Foundation Models.

Fei Ye, Zaixiang Zheng, Dongyu Xue, Yuning Shen, Lihao Wang, Yiming Ma, Yan Wang, Xinyou Wang, Xiangxin Zhou, Quanquan Gu

CoRR, 2024

Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization.

Xiangxin Zhou, Dongyu Xue, Ruizhe Chen, Zaixiang Zheng, Liang Wang, Quanquan Gu

CoRR, 2024

Diffusion Language Models Are Versatile Protein Learners.

Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, Shujian Huang, Quanquan Gu

Proceedings of the Forty-first International Conference on Machine Learning, 2024

2023

Systematic Exploration of Optimized Base Editing gRNA Design and Pleiotropic Effects with BExplorer.

Gongchen Zhang, Chenyu Zhu, Xiaohan Chen, Jifang Yan, Dongyu Xue, Zixuan Wei, Guohui Chuai, Qi Liu

Genom. Proteom. Bioinform., 2023

Structure-informed Language Models Are Protein Designers.

Zaixiang Zheng, Yifan Deng, Dongyu Xue, Yi Zhou, Fei Ye, Quanquan Gu

Proceedings of the International Conference on Machine Learning, 2023

2021

FL-QSAR: a federated learning-based QSAR prototype for collaborative drug discovery.

Shaoqi Chen, Dongyu Xue, Guohui Chuai, Qiang Yang, Qi Liu

Bioinform., 2021