Dongsup Kim
Orcid: 0000-0002-5916-6799
According to our database1,
Dongsup Kim
authored at least 32 papers
between 2002 and 2024.
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Bibliography
2024
AbFlex: designing antibody complementarity determining regions with flexible CDR definition.
Bioinform., March, 2024
2022
DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.
Bioinform., 2022
2020
Bioinform., 2020
2019
Bioinform., 2019
2018
KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking.
J. Cheminformatics, 2018
2017
Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server.
BMC Bioinform., 2017
Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.
BMC Bioinform., 2017
2016
Structure-based Markov random field model for representing evolutionary constraints on functional sites.
BMC Bioinform., 2016
Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds.
Bioinform., 2016
2013
FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action.
BMC Genom., 2013
2012
A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network.
BMC Syst. Biol., 2012
Coevolved Residues and the Functional Association for Intrinsically Disordered Proteins.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
2011
Drug-drug relationship based on target information: application to drug target identification.
BMC Syst. Biol., 2011
BMC Bioinform., 2011
2010
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship.
BMC Bioinform., 2010
Linear predictive coding representation of correlated mutation for protein sequence alignment.
BMC Bioinform., 2010
2009
A new method for revealing correlated mutations under the structural and functional constraints in proteins.
Bioinform., 2009
Bioinform., 2009
2008
Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways.
PLoS Comput. Biol., 2008
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.
BMC Bioinform., 2008
2007
Predicting and improving the protein sequence alignment quality by support vector regression.
BMC Bioinform., 2007
Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs.
BMC Bioinform., 2006
2005
Bioinform., 2005
2003
J. Bioinform. Comput. Biol., 2003
A computational pipeline for protein structure prediction and analysis at genome scale.
Bioinform., 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
2002
Comput. Sci. Eng., 2002