Dong-Guk Shin

According to our database1, Dong-Guk Shin authored at least 63 papers between 1985 and 2023.

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Bibliography

2023
Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

rCom: a route-based framework inferring cell type communication and regulatory network using single cell data.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021
Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Structural variation calling and genotyping by moment-based deep convolutional neural networks.
Int. J. Data Min. Bioinform., 2021

ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Efficient methods for hierarchical multi-omic feature extraction and visualisation.
Int. J. Data Min. Bioinform., 2020

A Framework for Route Based Pathway Analysis of Gene Expression Data.
Proceedings of the ICCBB 2020: 4th International Conference on Computational Biology and Bioinformatics, Bali Island, Indonesia, 27 December, 2021, 2020

cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Identification of Key Biological Pathway Routes in Cancer Cohorts.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

TensorSV: structural variation inference using tensors and variable topology neural networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators.
Bioinform., 2019

Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2016
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
PLoS Comput. Biol., 2016

Deep pathway analysis incorporating mutation information and gene expression data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2013
A Phrase-based Ontology Enabled Semantic Processing System for Web Search.
Trans. Mach. Learn. Data Min., 2013

A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models.
J. Comput. Biol., 2012

2011
A Semantic Processing System (SPS) for Biomedical Literature Web Search.
Proceedings of the Advances in Data Mining. 11th Industrial Conference, 2011

2010
Learning Bayesian networks with integration of indirect prior knowledge.
Int. J. Data Min. Bioinform., 2010

Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks.
Int. J. Data Min. Bioinform., 2010

Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009
Computing Consistency Between Microarray Data and Known Gene Regulation Relationships.
IEEE Trans. Inf. Technol. Biomed., 2009

An Improved Heuristic Approach for the Steiner Problem in Graphs.
Int. J. Comput. Their Appl., 2009

PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

2008
Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Meta Analysis of Microarray Data Using Gene Regulation Pathways.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2006
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2003
Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri.
Proceedings of the 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 2003

2002
A Comparative Study for Mining Biological Data.
Proceedings of the 11th Conference on Intelligent Systems: Emerging Technologies, 2002

2001
Comparing Trees in a Phylogenetic Relationship Repository.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

2000
A Graph-based Meta-data Framework for Interoperation between Genome Databases.
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams.
Proceedings of the working conference on Advanced visual interfaces, 2000

1999
Using Hellinger distance in a nearest neighbour classifier for relational databases.
Knowl. Based Syst., 1999

A Multistrategy Approach to Classification Learning in Databases.
Data Knowl. Eng., 1999

Centroid Trees with Application to String Processing.
Proceedings of the Prague Stringology Club Workshop 1999, 1999

Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases.
Proceedings of the 12th IEEE Symposium on Computer-Based Medical Systems (CBMS '99). 18-20 June 1999, 1999

1998
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment.
J. Database Manag., 1998

A metadata approach to query interoperation between molecular biology databases.
Bioinform., 1998

Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology.
Proceedings of the Visual Database Systems 4 (VDB4), 1998

A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment.
Proceedings of the Third International Conference on Integrated Design and Process Technology, IDPT, 1998

A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability.
Proceedings of the Third International Conference on Integrated Design and Process Technology, IDPT, 1998

A lightweight computational model for achieving location transparency in distributed environments.
Proceedings of the Computers and Their Applications (CATA-98), 1998

An effective heuristic algorithm for finding a steiner tree in graphs.
Proceedings of the Computers and Their Applications (CATA-98), 1998

A simple model capable of expressing meta-data for database interoperability.
Proceedings of the Computers and Their Applications (CATA-98), 1998

An epistemological display query interface.
Proceedings of the working conference on Advanced visual interfaces 1998, L'Aquila, Italy, May 24, 1998

Automatic query mapping among genomic databases: a pilot exploration.
Proceedings of the AMIA 1998, 1998

Establishing Logical Connectivity between Query Keywords and Database Contents.
Proceedings of the Advances in Artificial Intelligence, 1998

1995
Comparative study of relational and object-oriented modelings of genomic data.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

1994
An Expection-Driven Response Understanding Paradigm.
IEEE Trans. Knowl. Data Eng., 1994

EEL: An Instance-Based Learning Method for Databases.
Proceedings of the Seventh International Conference on Industrial and Engineering Applications of Artificial Intelligence and Expert Systems, 1994

Data and Knowledge Base Issues in Genomics: Introduction.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

A Context-Sensitive Discretization of Numeric Attributes for Classification Learning.
Proceedings of the Eleventh European Conference on Artificial Intelligence, 1994

1992
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system.
Comput. Appl. Biosci., 1992

1991
Fragmenting Relations Horizontally Using a Knowledge-Based Approach.
IEEE Trans. Software Eng., 1991

1990
Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving.
Int. J. Pattern Recognit. Artif. Intell., 1990

An Expectation-Driven Approach to Q-A Processing.
Proceedings of the First International Conference on Systems Integration, 1990

1988
Knowledge-aided engineering environment for design and manufacturing.
Proceedings of the Twelfth International Computer Software and Applications Conference, 1988

1985
An Extension of a First-Order Language and Its Applications (Many-Sorted Logic, Distributed Database Design, Resolution, Automatic Theorem Proving, Horizontal Partitioning).
PhD thesis, 1985


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