Dmitry A. Afonnikov

According to our database, Dmitry A. Afonnikov authored at least 10 papers between 1997 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2017

Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions.

Kirill E. Medvedev, Nikolay A. Kolchanov, Dmitry A. Afonnikov

J. Bioinform. Comput. Biol., 2017

Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.

Zakhar S. Mustafin, Sergey A. Lashin, Yury G. Matushkin, Konstantin V. Gunbin, Dmitry A. Afonnikov

BMC Bioinform., 2017

2012

Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell.

Yuriy L. Orlov, Han Xu, Dmitry A. Afonnikov, Bing Lim, Jian-Chien Heng, Ping Yuan, Ming Chen, Junli Yan, Neil D. Clarke, Nina Orlova, Mikael Huss, Konstantin V. Gunbin, Nikolay Podkolodnyy, Huck-Hui Ng

J. Integr. Bioinform., 2012

Computer System for Analysis of Molecular Evolution Modes (SAMEM): Analysis of molecular evolution modes at deep inner branches of the phylogenetic tree.

Konstantin V. Gunbin, Valentin V. Suslov, Mikhail A. Genaev, Dmitry A. Afonnikov

Silico Biol., 2012

2007

The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study.

Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov

Silico Biol., 2007

The Location of the Gene Regions Under Selective Pressure: Plato Algorithm Parallelization.

Yuri Vyatkin, Konstantin V. Gunbin, Alexey V. Snytnikov, Dmitry A. Afonnikov

Proceedings of the Parallel Computing Technologies, 2007

2004

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

Dmitry A. Afonnikov, Nikolay A. Kolchanov

Nucleic Acids Res., 2004

2002

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.

Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov

Nucleic Acids Res., 2002

2001

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.

Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov

Bioinform., 2001

1997

Detecting direct correlations between positions in multiple alignments of amino acid sequences.

Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov

Proceedings of the German Conference on Bioinformatics, 1997