Dmitrij Frishman

Orcid: 0000-0002-9006-4707

According to our database1, Dmitrij Frishman authored at least 56 papers between 1996 and 2024.

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Bibliography

2024
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans.
Proceedings of the Comparative Genomics - 21st International Conference, 2024

2021
TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains.
Bioinform., 2021

Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Briefings Bioinform., 2021

2020
AllesTM: predicting multiple structural features of transmembrane proteins.
BMC Bioinform., 2020

2018
Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.
PLoS Comput. Biol., 2018

SCOTCH: subtype A coreceptor tropism classification in HIV-1.
Bioinform., 2018

MutHTP: mutations in human transmembrane proteins.
Bioinform., 2018

2017
Assessment of cancer and virus antigens for cross-reactivity in human tissues.
Bioinform., 2017

2015
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.
BMC Bioinform., 2015

Expitope: a web server for epitope expression.
Bioinform., 2015

2014
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.
Nucleic Acids Res., 2014

Challenges in RNA virus bioinformatics.
Bioinform., 2014

2013
Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins.
PLoS Comput. Biol., 2013

QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis.
Nucleic Acids Res., 2013

RNAtips: analysis of temperature-induced changes of RNA secondary structure.
Nucleic Acids Res., 2013

Prediction of protein interaction types based on sequence and network features.
BMC Syst. Biol., 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data, 2013

2011
MIPS: curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res., 2011

DIMA 3.0: Domain Interaction Map.
Nucleic Acids Res., 2011

2010
Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions.
PLoS Comput. Biol., 2010

The Negatome database: a reference set of non-interacting protein pairs.
Nucleic Acids Res., 2010

TargetSpy: a supervised machine learning approach for microRNA target prediction.
BMC Bioinform., 2010

Pitfalls of supervised feature selection.
Bioinform., 2010

2009
PEDANT covers all complete RefSeq genomes.
Nucleic Acids Res., 2009

2008
DIMA 2.0 - predicted and known domain interactions.
Nucleic Acids Res., 2008

MIPS: analysis and annotation of genome information in 2007.
Nucleic Acids Res., 2008

2007
PEDANT genome database: 10 years online.
Nucleic Acids Res., 2007

Applying negative rule mining to improve genome annotation.
BMC Bioinform., 2007

Protein solubility: sequence based prediction and experimental verification.
Bioinform., 2007

Co-evolving residues in membrane proteins.
Bioinform., 2007

2006
Fold Designability, Distribution, and Disease.
PLoS Comput. Biol., 2006

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic Acids Res., 2006

MIPS: analysis and annotation of proteins from whole genomes in 2005.
Nucleic Acids Res., 2006

PROMPT: a protein mapping and comparison tool.
BMC Bioinform., 2006

The DIMA web resource - exploring the protein domain network.
Bioinform., 2006

2005
The PEDANT genome database in 2005.
Nucleic Acids Res., 2005

Alternative splicing and protein function.
BMC Bioinform., 2005

The MIPS mammalian protein?Cprotein interaction database.
Bioinform., 2005

The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: <i>in silico</i> Biology, Computational Genomics and Evolutionary Biology.
Bioinform., 2005

Mining sequence annotation databanks for association patterns.
Bioinform., 2005

2004
MIPS: analysis and annotation of proteins from whole genomes.
Nucleic Acids Res., 2004

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.
Nucleic Acids Res., 2004

No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
BMC Bioinform., 2004

2003
The PEDANT genome database.
Nucleic Acids Res., 2003

Phylogenetic Web Profiler.
Bioinform., 2003

Conservation of protein-protein interactions among Ascomycota species.
Proceedings of the German Conference on Bioinformatics, 2003

2002
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res., 2002

SNAPper: gene order predicts gene function.
Bioinform., 2002

2001
Functional and structural genomics using PEDANT.
Bioinform., 2001

2000
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res., 2000

1999
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res., 1999

1998
MIPS: a database for protein sequences and complete genomes.
Nucleic Acids Res., 1998

Comprehensive, comprehensible, distributed and intelligent databases: current status.
Bioinform., 1998

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.
Proceedings of the German Conference on Bioinformatics, 1998

1997
The MIPS Yeast Genome Database.
Proceedings of the German Conference on Bioinformatics, 1997

1996
Visualization and Analysis of the Complete Yeast Genome.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996


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