Dmitrij Frishman

According to our database, Dmitrij Frishman authored at least 56 papers between 1996 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2024

Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans.

Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller

Proceedings of the Comparative Genomics - 21st International Conference, 2024

2021

TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains.

Anja Mösch, Dmitrij Frishman

Bioinform., 2021

Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.

Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman

Briefings Bioinform., 2021

2020

AllesTM: predicting multiple structural features of transmembrane proteins.

Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman

BMC Bioinform., 2020

2018

Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.

Fei Qi, Magdalena Motz, Kirsten Jung, Jürgen Lassak, Dmitrij Frishman

PLoS Comput. Biol., 2018

SCOTCH: subtype A coreceptor tropism classification in HIV-1.

Hannah F. Löchel, Mona Riemenschneider, Dmitrij Frishman, Dominik Heider

Bioinform., 2018

MutHTP: mutations in human transmembrane proteins.

A. Kulandaisamy, S. Binny Priya, R. Sakthivel, Svetlana Tarnovskaya, Ilya Bizin, Peter Hönigschmid, Dmitrij Frishman, M. Michael Gromiha

Bioinform., 2018

2017

Assessment of cancer and virus antigens for cross-reactivity in human tissues.

Victor Jaravine, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman

Bioinform., 2017

2015

A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.

David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin

BMC Bioinform., 2015

Expitope: a web server for epitope expression.

Kerstin Haase, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman

Bioinform., 2015

2014

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.

Philipp Blohm, Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Andreas Ruepp, Dmitrij Frishman

Nucleic Acids Res., 2014

Challenges in RNA virus bioinformatics.

Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer

Bioinform., 2014

2013

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins.

Stefka Tyanova, Jürgen Cox, Jesper V. Olsen, Matthias Mann, Dmitrij Frishman

PLoS Comput. Biol., 2013

QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis.

Dmitry N. Ivankov, Natalya S. Bogatyreva, Peter Hönigschmid, Bastian Dislich, Sebastian Hogl, Peer-Hendrik Kuhn, Dmitrij Frishman, Stefan F. Lichtenthaler

Nucleic Acids Res., 2013

RNAtips: analysis of temperature-induced changes of RNA secondary structure.

Andrey Chursov, Sebastian J. Kopetzky, Gennady Bocharov, Dmitrij Frishman, Alexander Shneider

Nucleic Acids Res., 2013

Prediction of protein interaction types based on sequence and network features.

Florian Goebels, Dmitrij Frishman

BMC Syst. Biol., 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.

Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl

Big Data, 2013

2011

MIPS: curated databases and comprehensive secondary data resources in 2010.

Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov

Nucleic Acids Res., 2011

DIMA 3.0: Domain Interaction Map.

Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Frishman

Nucleic Acids Res., 2011

2010

Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions.

Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel

PLoS Comput. Biol., 2010

The Negatome database: a reference set of non-interacting protein pairs.

Pawel Smialowski, Philipp Pagel, Philip Wong, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Thomas Rattei, Dmitrij Frishman, Andreas Ruepp

Nucleic Acids Res., 2010

TargetSpy: a supervised machine learning approach for microRNA target prediction.

Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman

BMC Bioinform., 2010

Pitfalls of supervised feature selection.

Pawel Smialowski, Dmitrij Frishman, Stefan Kramer

Bioinform., 2010

2009

PEDANT covers all complete RefSeq genomes.

Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman

Nucleic Acids Res., 2009

2008

DIMA 2.0 - predicted and known domain interactions.

Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Normann Strack, Volker Stümpflen, Dmitrij Frishman

Nucleic Acids Res., 2008

MIPS: analysis and annotation of genome information in 2007.

Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei

Nucleic Acids Res., 2008

2007

PEDANT genome database: 10 years online.

M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman

Nucleic Acids Res., 2007

Applying negative rule mining to improve genome annotation.

Irena I. Artamonova, Goar Frishman, Dmitrij Frishman

BMC Bioinform., 2007

Protein solubility: sequence based prediction and experimental verification.

Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, Dmitrij Frishman

Bioinform., 2007

Co-evolving residues in membrane proteins.

Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman

Bioinform., 2007

2006

Fold Designability, Distribution, and Disease.

Philip Wong, Dmitrij Frishman

PLoS Comput. Biol., 2006

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.

Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes

Nucleic Acids Res., 2006

MIPS: analysis and annotation of proteins from whole genomes in 2005.

Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen

Nucleic Acids Res., 2006

PROMPT: a protein mapping and comparison tool.

Thorsten Schmidt, Dmitrij Frishman

BMC Bioinform., 2006

The DIMA web resource - exploring the protein domain network.

Philipp Pagel, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman

Bioinform., 2006

2005

The PEDANT genome database in 2005.

M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman

Nucleic Acids Res., 2005

Alternative splicing and protein function.

A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov

BMC Bioinform., 2005

The MIPS mammalian protein?Cprotein interaction database.

Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman

Bioinform., 2005

The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: <i>in silico</i> Biology, Computational Genomics and Evolutionary Biology.

Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman

Bioinform., 2005

Mining sequence annotation databanks for association patterns.

Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman

Bioinform., 2005

2004

MIPS: analysis and annotation of proteins from whole genomes.

Hans-Werner Mewes, Clara Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp

Nucleic Acids Res., 2004

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.

Matthias Heinig, Dmitrij Frishman

Nucleic Acids Res., 2004

No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.

Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman

BMC Bioinform., 2004

2003

The PEDANT genome database.

Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes

Nucleic Acids Res., 2003

Phylogenetic Web Profiler.

Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry

Bioinform., 2003

Conservation of protein-protein interactions among Ascomycota species.

Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman

Proceedings of the German Conference on Bioinformatics, 2003

2002

MIPS: a database for genomes and protein sequences.

Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil

Nucleic Acids Res., 2002

SNAPper: gene order predicts gene function.

Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman

Bioinform., 2002

2001

Functional and structural genomics using PEDANT.

Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes

Bioinform., 2001

2000

MIPS: a database for genomes and protein sequences.

Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil

Nucleic Acids Res., 2000

1999

MIPS: a database for genomes and protein sequences.

Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman

Nucleic Acids Res., 1999

1998

MIPS: a database for protein sequences and complete genomes.

Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman

Nucleic Acids Res., 1998

Comprehensive, comprehensible, distributed and intelligent databases: current status.

Dmitrij Frishman, Klaus Heumann, Arthur M. Lesk, Hans-Werner Mewes

Bioinform., 1998

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.

Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand

Proceedings of the German Conference on Bioinformatics, 1998

1997

The MIPS Yeast Genome Database.

Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, Andreas Maierl, Alfred Zollner, Hans-Werner Mewes

Proceedings of the German Conference on Bioinformatics, 1997

1996

Visualization and Analysis of the Complete Yeast Genome.

Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes

Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996