Diogo Pratas

According to our database, Diogo Pratas authored at least 48 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

An experimental sorting method for improving metagenomic data encoding.

Diogo Pratas, Armando J. Pinho

Proceedings of the Data Compression Conference, 2024

Copy models for protein sequence compression.

Armando J. Pinho, Diogo Pratas

Proceedings of the Data Compression Conference, 2024

2023

TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa.

João Carneiro, Rita P. Magalhães, Victor M. de la Oliva Roque, Manuel Simões, Diogo Pratas, Sergio F. Sousa

J. Comput. Aided Mol. Des., June, 2023

Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications.

Jorge Miguel Silva, Diogo Pratas, Sérgio Matos

Proceedings of the Technological Innovation for Connected Cyber Physical Spaces, 2023

JARVIS2: a data compressor for large genome sequences.

Diogo Pratas, Armando J. Pinho

Proceedings of the Data Compression Conference, 2023

2022

Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods.

Jorge Miguel Silva, Diogo Pratas, Tânia Caetano, Sérgio Matos

Proceedings of the Pattern Recognition and Image Analysis - 10th Iberian Conference, 2022

2021

Automatic analysis of artistic paintings using information-based measures.

Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho

Pattern Recognit., 2021

AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models.

Milton Silva, Diogo Pratas, Armando J. Pinho

Entropy, 2021

A semi-automatic methodology for analysing distributed and private biobanks.

João Rafael Almeida, Diogo Pratas, José Luís Oliveira

Comput. Biol. Medicine, 2021

Persistent minimal sequences of SARS-CoV-2.

Diogo Pratas, Jorge Miguel Silva

Bioinform., 2021

2020

GTO: A toolkit to unify pipelines in genomic and proteomic research.

João Rafael Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas

SoftwareX, 2020

Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model.

Jorge Miguel Silva, Eduardo Pinho, Sérgio Matos, Diogo Pratas

Entropy, 2020

2019

A Reference-Free Lossless Compression Algorithm for DNA Sequences Using a Competitive Prediction of Two Classes of Weighted Models.

Diogo Pratas, Seyed Morteza Hosseini, Jorge Miguel, Armando J. Pinho

Entropy, 2019

Cryfa: a secure encryption tool for genomic data.

Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho

Bioinform., 2019

GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences.

Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes.

Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

A Probabilistic Method to Find and Visualize Distinct Regions in Protein Sequences.

Morteza Hosseini, Diogo Pratas, Armando J. Pinho

Proceedings of the 27th European Signal Processing Conference, 2019

2018

Extended-alphabet finite-context models.

João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho

Pattern Recognit. Lett., 2018

Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes.

Diogo Pratas, Raquel M. Silva, Armando J. Pinho

Entropy, 2018

A DNA Sequence Corpus for Compression Benchmark.

Diogo Pratas, Armando J. Pinho

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

Compression of Amino Acid Sequences.

Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

NET-ASAR: A Tool for DNA Sequence Search Based on Data Compression.

Manuel Gaspar, Diogo Pratas, Armando J. Pinho

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight.

Diogo Pratas, Armando J. Pinho

Proceedings of the 26th European Signal Processing Conference, 2018

An Application of Data Compression Models to Handwritten Digit Classification.

Armando J. Pinho, Diogo Pratas

Proceedings of the Advanced Concepts for Intelligent Vision Systems, 2018

2017

Cryfa: A Tool to Compact and Encrypt FASTA Files.

Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences.

Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

On the Role of Inverted Repeats in DNA Sequence Similarity.

Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

On the Approximation of the Kolmogorov Complexity for DNA Sequences.

Diogo Pratas, Armando J. Pinho

Proceedings of the Pattern Recognition and Image Analysis - 8th Iberian Conference, 2017

Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome.

Diogo Pratas, Seyed Morteza Hosseini, Raquel M. Silva, Armando J. Pinho, Paulo Jorge S. G. Ferreira

Proceedings of the Pattern Recognition and Image Analysis - 8th Iberian Conference, 2017

2016

Compression and analysis of genomic data

Diogo Pratas

PhD thesis, 2016

A Survey on Data Compression Methods for Biological Sequences.

Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho

Inf., 2016

Efficient Compression of Genomic Sequences.

Diogo Pratas, Armando J. Pinho, Paulo Jorge S. G. Ferreira

Proceedings of the 2016 Data Compression Conference, 2016

Authorship Attribution Using Relative Compression.

Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira

Proceedings of the 2016 Data Compression Conference, 2016

2015

Three minimal sequences found in Ebola virus genomes and absent from human DNA.

Raquel M. Silva, Diogo Pratas, Luísa Castro, Armando J. Pinho, Paulo Jorge S. G. Ferreira

Bioinform., 2015

2014

MFCompress: a compression tool for FASTA and multi-FASTA data.

Armando J. Pinho, Diogo Pratas

Bioinform., 2014

A New Compressor for Measuring Distances among Images.

Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira

Proceedings of the Image Analysis and Recognition - 11th International Conference, 2014

Exploring deep Markov models in genomic data compression using sequence pre-analysis.

Diogo Pratas, Armando J. Pinho

Proceedings of the 22nd European Signal Processing Conference, 2014

A Conditional Compression Distance that Unveils Insights of the Genomic Evolution.

Diogo Pratas, Armando J. Pinho

Proceedings of the Data Compression Conference, 2014

Information Profiles for DNA Pattern Discovery.

Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira

Proceedings of the Data Compression Conference, 2014

2013

A Compression Model for DNA Multiple Sequence Alignment Blocks.

Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho

IEEE Trans. Inf. Theory, 2013

A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches.

Sara P. Garcia, João M. O. S. Rodrigues, Sérgio Santos, Diogo Pratas, Vera Afreixo, Carlos A. C. Bastos, Paulo Jorge S. G. Ferreira, Armando J. Pinho

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

Exon: A Web-Based Software Toolkit for DNA Sequence Analysis.

Diogo Pratas, Armando J. Pinho, Sara P. Garcia

Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012

On the Detection of Unknown Locally Repeating Patterns in Images.

Diogo Pratas, Armando J. Pinho

Proceedings of the Image Analysis and Recognition - 9th International Conference, 2012

Compression of Whole Genome Alignments Using a Mixture of Finite-Context Models.

Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho

Proceedings of the Image Analysis and Recognition - 9th International Conference, 2012

Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models.

Diogo Pratas, Armando J. Pinho, Sara P. Garcia

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011

Complexity Profiles of DNA Sequences Using Finite-Context Models.

Armando J. Pinho, Diogo Pratas, Sara P. Garcia

Proceedings of the Information Quality in e-Health, 2011

Compressing the Human Genome Using Exclusively Markov Models.

Diogo Pratas, Armando J. Pinho

Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

Symbolic to numerical conversion of DNA sequences using finite-context models.

Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira, Sara P. Garcia

Proceedings of the 19th European Signal Processing Conference, 2011