Desmond G. Higgins

According to our database, Desmond G. Higgins authored at least 41 papers between 1987 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.

Fabian Sievers, Desmond G. Higgins

Bioinform., 2020

2017

Protein multiple sequence alignment benchmarking through secondary structure prediction.

Quan Le, Fabian Sievers, Desmond G. Higgins

Bioinform., 2017

2016

ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.

Peter Jehl, Jean Manguy, Denis C. Shields, Desmond G. Higgins, Norman E. Davey

Nucleic Acids Res., 2016

Using <i>de novo</i> protein structure predictions to measure the quality of very large multiple sequence alignments.

Gearoid Fox, Fabian Sievers, Desmond G. Higgins

Bioinform., 2016

2015

OD-seq: outlier detection in multiple sequence alignments.

Peter Jehl, Fabian Sievers, Desmond G. Higgins

BMC Bioinform., 2015

Instability in progressive multiple sequence alignment algorithms.

Kieran Boyce, Fabian Sievers, Desmond G. Higgins

Algorithms Mol. Biol., 2015

2014

GWIPS-viz: development of a ribo-seq genome browser.

Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov

Nucleic Acids Res., 2014

Systematic exploration of guide-tree topology effects for small protein alignments.

Fabian Sievers, Graham M. Hughes, Desmond G. Higgins

BMC Bioinform., 2014

2013

Making automated multiple alignments of very large numbers of protein sequences.

Fabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins

Bioinform., 2013

2010

Detecting microRNA activity from gene expression data.

Stephen F. Madden, Susan B. Carpenter, Ian B. Jeffery, Harry Björkbacka, Katherine A. Fitzgerald, Luke A. O'Neill, Desmond G. Higgins

BMC Bioinform., 2010

Sequence embedding for fast construction of guide trees for multiple sequence alignment.

Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G. Higgins

Algorithms Mol. Biol., 2010

2008

R-Coffee: a web server for accurately aligning noncoding RNA sequences.

Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame

Nucleic Acids Res., 2008

Distinct Patterns in the Regulation and Evolution of Human Cancer Genes.

Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas

Silico Biol., 2008

Fast embedding methods for clustering tens of thousands of sequences.

Gordon Blackshields, Mark A. Larkin, Iain M. Wallace, Andreas Wilm, Desmond G. Higgins

Comput. Biol. Chem., 2008

2007

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.

Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame

Nucleic Acids Res., 2007

Supervised multivariate analysis of sequence groups to identify specificity determining residues.

Iain M. Wallace, Desmond G. Higgins

BMC Bioinform., 2007

Clustal W and Clustal X version 2.0.

Mark A. Larkin, Gordon Blackshields, Nigel P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins

Bioinform., 2007

Integrating transcription factor binding site information with gene expression datasets.

Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins

Bioinform., 2007

2006

Analysis and Comparison of Benchmarks for Multiple Sequence Alignment.

Gordon Blackshields, Iain M. Wallace, Mark A. Larkin, Desmond G. Higgins

Silico Biol., 2006

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane

BMC Bioinform., 2006

APDB: a web server to evaluate the accuracy of sequence alignments using structural information.

Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame

Bioinform., 2006

2005

Evaluation of iterative alignment algorithms for multiple alignment.

Iain M. Wallace, Orla O'Sullivan, Desmond G. Higgins

Bioinform., 2005

MADE4: an R package for multivariate analysis of gene expression data.

Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins

Bioinform., 2005

2003

Multiple sequence alignment with the Clustal series of programs.

Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson

Nucleic Acids Res., 2003

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Aedín C. Culhane, Guy Perrière, Desmond G. Higgins

BMC Bioinform., 2003

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.

Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurélien Grosdidier, Cédric Notredame

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

A SAT-Based Approach to Multiple Sequence Alignment.

Steven D. Prestwich, Desmond G. Higgins, Orla O'Sullivan

Proceedings of the Principles and Practice of Constraint Programming, 2003

2002

Between-group analysis of microarray data.

Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins

Bioinform., 2002

1999

MIAH: automatic alignment of eukaryotic SSU rRNAs.

Patricia Thébault, Pierre Monestie, Annette McGrath, Desmond G. Higgins

Bioinform., 1999

1998

Optimization of ribosomal RNA profile alignments.

Emmet A. O'Brien, Cédric Notredame, Desmond G. Higgins

Bioinform., 1998

Empirical estimation of the reliability of ribosomal RNA alignments.

Emmet A. O'Brien, Desmond G. Higgins

Bioinform., 1998

COFFEE: an objective function for multiple sequence alignments.

Cédric Notredame, Liisa Holm, Desmond G. Higgins

Bioinform., 1998

1994

Improved sensitivity of profile searches through the use of sequence weights and gap excision.

Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson

Comput. Appl. Biosci., 1994

1993

The EMBL data library.

Catherine M. Rice, Rainer Fuchs, Desmond G. Higgins, Peter Stoehr, Graham Cameron

Nucleic Acids Res., 1993

1992

GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content.

Denis C. Shields, Desmond G. Higgins, P. M. Sharp

Comput. Appl. Biosci., 1992

EMBLSCAN: fast approximate DNA database searches on compact disc.

Desmond G. Higgins, Peter Stoehr

Comput. Appl. Biosci., 1992

CLUSTAL V: improved software for multiple sequence alignment.

Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs

Comput. Appl. Biosci., 1992

Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets.

Desmond G. Higgins

Comput. Appl. Biosci., 1992

OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.

Jaap Heringa, Hubert Sommerfeldt, Desmond G. Higgins, Patrick Argos

Comput. Appl. Biosci., 1992

1989

Fast and sensitive multiple sequence alignments on a microcomputer.

Desmond G. Higgins, P. M. Sharp

Comput. Appl. Biosci., 1989

1987

Interfacing similarity search software with the sequence retrieval system ACNUC.

Desmond G. Higgins, Manolo Gouy

Comput. Appl. Biosci., 1987