Dennis R. Livesay

According to our database, Dennis R. Livesay authored at least 21 papers between 2005 and 2015.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2015

Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments.

Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay

PLoS Comput. Biol., 2015

A virtual pebble game to ensemble average graph rigidity.

Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs

Algorithms Mol. Biol., 2015

2013

Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity.

Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay

PLoS Comput. Biol., 2013

A visual analytics approach to exploring protein flexibility subspaces.

Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen

Proceedings of the IEEE Pacific Visualization Symposium, 2013

2012

Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.

Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay

PLoS Comput. Biol., 2012

2011

Topology Improves Phylogenetic Motif Functional Site Predictions.

K. C. Dukka Bahadur, Dennis R. Livesay

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics.

Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma

Comput. Graph. Forum, 2011

Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game.

Luis C. González, Dennis R. Livesay, Donald J. Jacobs

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.

Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan

Nucleic Acids Res., 2010

2008

Conformational Entropy of an Ideal Cross-Linking Polymer Chain.

Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs

Entropy, 2008

Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.

Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay

BMC Bioinform., 2008

Improving position-specific predictions of protein functional sites using phylogenetic motifs.

K. C. Dukka Bahadur, Dennis R. Livesay

Bioinform., 2008

2007

eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities.

Satish Chikkagoudar, Usman Roshan, Dennis R. Livesay

Nucleic Acids Res., 2007

Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na⁺symporter family.

Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari, Usman Roshan

BMC Bioinform., 2007

How accurate and statistically robust are catalytic site predictions based on closeness centrality?

Eric Chea, Dennis R. Livesay

BMC Bioinform., 2007

Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks.

Swati Pande, Amar Raheja, Dennis R. Livesay

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006

Probalign: multiple sequence alignment using partition function posterior probabilities.

Usman Roshan, Dennis R. Livesay

Bioinform., 2006

Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees.

Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005

MINER: software for phylogenetic motif identification.

David La, Dennis R. Livesay

Nucleic Acids Res., 2005

Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.

David La, Dennis R. Livesay

BMC Bioinform., 2005

Improved Phylogenetic Motif Detection Using Parsimony.

Usman Roshan, Dennis R. Livesay, David La

Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005