Denis C. Bauer

According to our database, Denis C. Bauer authored at least 26 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Privacy-hardened and hallucination-resistant synthetic data generation with logic-solvers.

Mark A. Burgess, Brendan Hosking, Roc Reguant, Anubhav Kaphle, Mitchell J. O'Brien, Letitia M. F. Sng, Yatish Jain, Denis C. Bauer

CoRR, 2024

AskBeacon - Performing genomic data exchange and analytics with natural language.

Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer

CoRR, 2024

2023

Prediction of Coronary Artery Disease Risk Using Genetic and Phenotypic Variables.

Letitia M. F. Sng, Reevanshi Sharma, Sam Bagot, Denis C. Bauer, Natalie A. Twine

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

PEPS: Polygenic Epistatic Phenotype Simulation.

Roc Reguant, Mitchell J. O'Brien, Arash Bayat, Brendan Hosking, Yatish Jain, Natalie A. Twine, Denis C. Bauer

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

Data Visualization of CRISPR-Cas9 Guide RNA Design Tools.

Yatish Jain, Fathima Afra Mohamed Izzath, Laurence O. W. Wilson, Denis C. Bauer

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

An Approach for Generating Realistic Australian Synthetic Healthcare Data.

Ibrahima Diouf, John Grimes, Mitchell J. O'Brien, Hamed Hassanzadeh, Donna Truran, Hoa Ngo, Parnesh Raniga, Michael Lawley, Denis C. Bauer, David P. Hansen, Sankalp Khanna, Roc Reguant

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward.

Leonid Chindelevitch, Elita Jauneikaite, Nicole E. Wheeler, Kasim Allel, Bede Yaw Ansiri-Asafoakaa, Wireko A. Awuah, Denis C. Bauer, Stephan Beisken, Kara Fan, Gary Grant, Michael Graz, Yara Khalaf, Veranja Liyanapathirana, Carlos Montefusco-Pereira, Lawrence Mugisha, Atharv Naik, Sylvia Nanono, Anthony Nguyen, Timothy Rawson, Kessendri Reddy, Juliana M. Ruzante, Anneke Schmider, Roman Stocker, Leonhardt Unruh, Daniel Waruingi, Heather Graz, Maarten van Dongen

CoRR, 2022

2021

Domain-specific introduction to machine learning terminology, pitfalls and opportunities in CRISPR-based gene editing.

Aidan R. O'Brien, Gaetan Burgio, Denis C. Bauer

Briefings Bioinform., 2021

2020

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping.

Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj

Briefings Bioinform., 2020

2019

Artificial Intelligence and Machine Learning in Bioinformatics.

Kaitao Lai, Natalie Twine, Aidan O'Brien, Yi Guo, Denis C. Bauer

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

2018

Evaluation of computational programs to predict HLA genotypes from genomic sequencing data.

Denis C. Bauer, Armella Zadoorian, Laurence O. W. Wilson, Melbourne Genomics Health Alliance, Natalie P. Thorne

Briefings Bioinform., 2018

2017

Breaking the Curse of Dimensionality for Machine Learning on Genomic Data.

Aidan O'Brien, Piotr Szul, Oscar Luo, Andrew George, Robert Dunne, Denis C. Bauer

Proceedings of the Workshop on Advances in Bioinformatics and Artificial Intelligence: Bridging the Gap co-located with 26th International Joint Conference on Artificial Intelligence (IJCAI 2017), 2017

Interacting with Genomic Data: Clinician Requirements and Prototype Structure.

Dana Bradford, Shlomo Berkovsky, Melissa Martyn, Tim Bakkar, Martin Krahnert, Michelle Rodriguez, Denis C. Bauer, Derek Ireland, Clara Gaff

Proceedings of the Integrating and Connecting Care, 2017

2014

Blue: correcting sequencing errors using consensus and context.

Paul Greenfield, Konsta Duesing, Alexie Papanicolaou, Denis C. Bauer

Bioinform., 2014

NGSANE: a lightweight production informatics framework for high-throughput data analysis.

Fabian A. Buske, Hugh J. French, Martin A. Smith, Susan J. Clark, Denis C. Bauer

Bioinform., 2014

2013

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci.

Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey

Bioinform., 2013

2011

Sorting the nuclear proteome.

Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén

Bioinform., 2011

2010

Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster.

Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey, Mikael Bodén

Neurocomputing, 2010

Dual-functioning transcription factors in the developmental gene network of <i>Drosophila melanogaster</i>.

Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey

BMC Bioinform., 2010

Assigning roles to DNA regulatory motifs using comparative genomics.

Fabian A. Buske, Mikael Bodén, Denis C. Bauer, Timothy L. Bailey

Bioinform., 2010

2009

Optimizing static thermodynamic models of transcriptional regulation.

Denis C. Bauer, Timothy L. Bailey

Bioinform., 2009

2008

Studying the functional conservation of cis-regulatory modules and their transcriptional output.

Denis C. Bauer, Timothy L. Bailey

BMC Bioinform., 2008

STREAM: Static Thermodynamic REgulAtory Model of transcription.

Denis C. Bauer, Timothy L. Bailey

Bioinform., 2008

Predicting SUMOylation Sites.

Denis C. Bauer, Fabian A. Buske, Mikael Bodén

Proceedings of the Pattern Recognition in Bioinformatics, 2008

2006

STAR: predicting recombination sites from amino acid sequence.

Denis C. Bauer, Mikael Bodén, Ricarda Thier, Elizabeth M. J. Gillam

BMC Bioinform., 2006

2005

Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence).

Denis C. Bauer, Mikael Bodén, Ricarda Thier, Zheng Yuan

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005