Degui Zhi

Orcid: 0000-0001-7754-1890

According to our database1, Degui Zhi authored at least 38 papers between 2006 and 2024.

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Bibliography

2024
Genetic InfoMax: Exploring Mutual Information Maximization in High-Dimensional Imaging Genetics Studies.
Trans. Mach. Learn. Res., 2024

2023
Syllable-PBWT for space-efficient haplotype long-match query.
Bioinform., January, 2023

PheME: A deep ensemble framework for improving phenotype prediction from multi-modal data.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Training Recurrent Neural Network-Based Model to Predict COVID-19 Patient Risk for PASC using Pytorch_EHR - Hands-on Tutorial on N3C.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

A Deep-Learning-based Two-Compartment Predictive Model (PKRNN-2CM) for Vancomycin Therapeutic Drug Monitoring.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

2022
PK-RNN-V E: A deep learning model approach to vancomycin therapeutic drug monitoring using electronic health record data.
J. Biomed. Informatics, 2022

Toward a standard formal semantic representation of the model card report.
BMC Bioinform., 2022

Haplotype Threading Using the Positional Burrows-Wheeler Transform.
Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022

Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction.
Proceedings of the AMIA 2022, 2022

Explainability versus Accuracy to Engender Trust.
Proceedings of the AMIA 2022, 2022

Pancreatic cancer risk prediction using recurrent neural network models trained on electronic health records and claims data.
Proceedings of the AMIA 2022, 2022

2021
Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction.
npj Digit. Medicine, 2021

Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data.
CoRR, 2021

d-PBWT: dynamic positional Burrows-Wheeler transform.
Bioinform., 2021

Efficient Haplotype Block Matching in Bi-Directional PBWT.
Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

mcPBWT: Space-Efficient Multi-column PBWT Scanning Algorithm for Composite Haplotype Matching.
Proceedings of the Computational Advances in Bio and Medical Sciences: 11th International Conference, 2021

CovRNN: predicting outcomes of COVID-19 patients on admission using their electronic health records with minimal data processing.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Generalizable Gated Recurrent Neural Network based model to predict COVID-19 patient outcomes on admission.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.
J. Am. Medical Informatics Assoc., 2020

Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction.
CoRR, 2020

2019
Time-sensitive clinical concept embeddings learned from large electronic health records.
BMC Medical Informatics Decis. Mak., 2019

Network context matters: graph convolutional network model over social networks improves the detection of unknown HIV infections among young men who have sex with men.
J. Am. Medical Informatics Assoc., 2019

Multi-allelic positional Burrows-Wheeler transform.
BMC Bioinform., 2019

Efficient haplotype matching between a query and a panel for genealogical search.
Bioinform., 2019

2018
A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set.
J. Biomed. Informatics, 2018

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.
BMC Bioinform., 2018

Asthma Onset Prediction Using Structured EMR Data.
Proceedings of the AMIA 2018, 2018

Development of HeartData, a Data Discovery Index Prototype for Cardiovascular data.
Proceedings of the AMIA 2018, 2018

2017
Ultra-Fast Identity by Descent Detection in Biobank-Scale Cohorts Using Positional Burrows-Wheeler Transform.
Proceedings of the Research in Computational Molecular Biology, 2017

Clinical Named Entity Recognition Using Deep Learning Models.
Proceedings of the AMIA 2017, 2017

2013
Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
Bioinform., 2013

2012
Genotype calling from next-generation sequencing data using haplotype information of reads.
Bioinform., 2012

2011
Length bias correction for RNA-seq data in gene set analyses.
Bioinform., 2011

2010
Alignment-free local structural search by writhe decomposition.
Bioinform., 2010

2007
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

2006
Discovery and analysis of mosaic arrangements in biological sequences and structures.
PhD thesis, 2006

AliWABA: alignment on the web through an A-Bruijn approach.
Nucleic Acids Res., 2006

Representing and comparing protein structures as paths in three-dimensional space.
BMC Bioinform., 2006


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