Debswapna Bhattacharya

Orcid: 0000-0002-9630-0141

According to our database1, Debswapna Bhattacharya authored at least 21 papers between 2013 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2024
Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules.
CoRR, 2024

2023
E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction.
PLoS Comput. Biol., 2023

2022
Guest Editorial for Selected Papers From BIOKDD 2021.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2021
Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
PLoS Comput. Biol., 2021

DeepRefiner: high-accuracy protein structure refinement by deep network calibration.
Nucleic Acids Res., 2021

20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021).
Proceedings of the KDD '21: The 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2021

Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct.
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks.
Bioinform., 2020

2019
refineD: improved protein structure refinement using machine learning based restrained relaxation.
Bioinform., 2019

How Effective is Contact-assisted Protein Threading?
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Contact-assisted Protein Threading: An Evolving New Direction.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.
Bioinform., 2017

2016
3Drefine: an interactive web server for efficient protein structure refinement.
Nucleic Acids Res., 2016

DeepQA: improving the estimation of single protein model quality with deep belief networks.
BMC Bioinform., 2016

ConEVA: a toolbox for comprehensive assessment of protein contacts.
BMC Bioinform., 2016

UniCon3D: <i>de novo</i> protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling.
Bioinform., 2016

FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling.
Bioinform., 2016

2015
Large-scale model quality assessment for improving protein tertiary structure prediction.
Bioinform., 2015

2013
Automated protein structure refinement using i3Drefine software and its assessment in CASP10.
Proceedings of the ACM Conference on Bioinformatics, 2013

Protein Structure Refinement by Iterative Fragment Exchange.
Proceedings of the ACM Conference on Bioinformatics, 2013


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