Dean C. Barratt

According to our database, Dean C. Barratt authored at least 111 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy.

Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

Int. J. Comput. Assist. Radiol. Surg., June, 2024

Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker.

Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

IEEE Trans. Biomed. Eng., March, 2024

Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation.

Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu

Medical Image Anal., January, 2024

Active learning using adaptable task-based prioritisation.

Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu

Medical Image Anal., 2024

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence.

Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean C. Barratt, Yipeng Hu

CoRR, 2024

Competing for pixels: a self-play algorithm for weakly-supervised segmentation.

Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

CoRR, 2024

Semi-weakly-supervised neural network training for medical image registration.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu

CoRR, 2024

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI.

Yinsong Xu, Yipei Wang, Ziyi Shen, Iani J. M. B. Gayo, Natasha Thorley, Shonit Punwani, Aidong Men, Dean C. Barratt, Qingchao Chen, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity.

Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker.

Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

One Registration is Worth Two Segmentations.

Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images.

Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed

Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu

Medical Image Anal., December, 2023

Meta-Learning Initializations for Interactive Medical Image Registration.

Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt

IEEE Trans. Medical Imaging, March, 2023

Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy.

Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt

Int. J. Comput. Assist. Radiol. Surg., 2023

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images.

Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed

Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion.

Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Imaging with Deep Learning, 2023

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction.

Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Proceedings of the Simplifying Medical Ultrasound - 4th International Workshop, 2023

Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames.

Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Non-rigid Medical Image Registration using Physics-informed Neural Networks.

Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu

Proceedings of the Information Processing in Medical Imaging, 2023

2022

Freehand ultrasound without external trackers.

Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Dataset, November, 2022

Cross-institution Male Pelvic Structures.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu

Dataset, September, 2022

Cross-Modality Image Registration Using a Training-Time Privileged Third Modality.

Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu

IEEE Trans. Medical Imaging, 2022

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks.

Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt

IEEE Trans. Medical Imaging, 2022

Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study.

Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu

Medical Image Anal., 2022

Image quality assessment for machine learning tasks using meta-reinforcement learning.

Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

Medical Image Anal., 2022

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation.

Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu

CoRR, 2022

The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation.

Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu

Proceedings of the Applications of Medical Artificial Intelligence, 2022

Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration.

Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy.

Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

Proceedings of the Cancer Prevention Through Early Detection, 2022

Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data.

Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt

Proceedings of the Simplifying Medical Ultrasound - Third International Workshop, 2022

Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration.

Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt

Proceedings of the Simplifying Medical Ultrasound - Third International Workshop, 2022

FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning.

Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu

Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021

Real-time multimodal image registration with partial intraoperative point-set data.

Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt

Medical Image Anal., 2021

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks.

Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt

CoRR, 2021

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images.

Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Understanding and Analysis - 25th Annual Conference, 2021

Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation.

Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt

Proceedings of the Medical Imaging 2021: Image Processing, Online, February 15-19, 2021, 2021

End-to-end forecasting of needle trajectory in percutaneous ablation.

Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt

Proceedings of the Medical Imaging 2021: Image-Guided Procedures, 2021

Image quality assessment for closed-loop computer-assisted lung ultrasound.

Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoff J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu

Proceedings of the Medical Imaging 2021: Image-Guided Procedures, 2021

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability.

Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network.

Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati

Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation.

Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection.

Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu

Proceedings of the Information Processing in Medical Imaging, 2021

2020

DeepReg: a deep learning toolkit for medical image registration.

Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Dataset, November, 2020

DeepReg: a deep learning toolkit for medical image registration.

Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

J. Open Source Softw., 2020

Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination.

Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes.

Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification.

Alex Grimwood, Helen McNair, Yipeng Hu, Ester Bonmati, Dean C. Barratt, Emma J. Harris

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Multimodality Biomedical Image Registration Using Free Point Transformer Networks.

Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt

Proceedings of the Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis, 2020

2019

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration.

Nooshin Ghavami, Yipeng Hu, Eli Gibson, Ester Bonmati, Mark Emberton, Caroline M. Moore, Dean C. Barratt

Medical Image Anal., 2019

Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors.

João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson

Proceedings of the Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis, 2019

Conditional Segmentation in Lieu of Image Registration.

Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks.

Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt

IEEE Trans. Medical Imaging, 2018

Weakly-supervised convolutional neural networks for multimodal image registration.

Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren

Medical Image Anal., 2018

NiftyNet: a deep-learning platform for medical imaging.

Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren

Comput. Methods Programs Biomed., 2018

A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images.

João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson

Int. J. Comput. Assist. Radiol. Surg., 2018

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures.

Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt

Int. J. Comput. Assist. Radiol. Surg., 2018

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks.

Nooshin Ghavami, Yipeng Hu, Ester Bonmati, Rachael Rodell, Eli Gibson, Caroline M. Moore, Dean C. Barratt

Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network.

Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren

Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

Adversarial Deformation Regularization for Training Image Registration Neural Networks.

Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning.

Eli Gibson, Yipeng Hu, Nooshin Ghavami, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Henkjan J. Huisman, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Label-driven weakly-supervised learning for multimodal deformarle image registration.

Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017

Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy.

Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt

IEEE Trans. Biomed. Eng., 2017

A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs.

Lianghao Han, Hua Dong, Jamie R. McClelland, Liangxiu Han, David J. Hawkes, Dean C. Barratt

Medical Image Anal., 2017

Designing image segmentation studies: Statistical power, sample size and reference standard quality.

Eli Gibson, Yipeng Hu, Henkjan J. Huisman, Dean C. Barratt

Medical Image Anal., 2017

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network.

Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren

CoRR, 2017

Label-driven weakly-supervised learning for multimodal deformable image registration.

Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren

CoRR, 2017

NiftyNet: a deep-learning platform for medical imaging.

Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren

CoRR, 2017

Breathing motion compensated registration of laparoscopic liver ultrasound to CT.

João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson

Proceedings of the Medical Imaging 2017: Image-Guided Procedures, 2017

Deep residual networks for automatic segmentation of laparoscopic videos of the liver.

Eli Gibson, Maria R. Robu, Stephen A. Thompson, Eddie Edwards, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson

Proceedings of the Medical Imaging 2017: Image-Guided Procedures, 2017

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks.

Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks.

Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble

Proceedings of the Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 2017

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks.

Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

2016

Impact of region contouring variability on image-based focal therapy evaluation.

Eli Gibson, Ian A. Donaldson, Taimur T. Shah, Yipeng Hu, Hashim Uddin Ahmed, Dean C. Barratt

Proceedings of the Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February, 2016

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions.

Yipeng Hu, Ester Bonmati, Eli Gibson, John H. Hipwell, David J. Hawkes, Steven Bandula, Stephen P. Pereira, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound.

Ester Bonmati, Yipeng Hu, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt

Proceedings of the Computer-Assisted and Robotic Endoscopy - Third International Workshop, 2016

2015

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration.

Yipeng Hu, Eli Gibson, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Dean C. Barratt

Medical Image Anal., 2015

Locally rigid, vessel-based registration for laparoscopic liver surgery.

Yi Song, Johannes Totz, Steve Thompson, Stian Flage Johnsen, Dean C. Barratt, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, Sébastien Ourselin, David J. Hawkes, Matthew J. Clarkson

Int. J. Comput. Assist. Radiol. Surg., 2015

Statistical Power in Image Segmentation: Relating Sample Size to Reference Standard Quality.

Eli Gibson, Henkjan J. Huisman, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

2014

A Nonlinear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images.

Lianghao Han, John H. Hipwell, Björn Eiben, Dean C. Barratt, Marc Modat, Sébastien Ourselin, David J. Hawkes

IEEE Trans. Medical Imaging, 2014

Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge.

Geert Litjens, Robert Toth, Wendy J. M. van de Ven, Caroline Hoeks, Sjoerd Kerkstra, Bram van Ginneken, Graham Vincent, Gwenaël Guillard, Neil Birbeck, Jindang Zhang, Robin Strand, Filip Malmberg, Yangming Ou, Christos Davatzikos, Matthias Kirschner, Florian Jung, Jing Yuan, Wu Qiu, Qinquan Gao, Philip J. Edwards, Bianca Maan, Ferdinand van der Heijden, Soumya Ghose, Jhimli Mitra, Jason Dowling, Dean C. Barratt, Henkjan J. Huisman, Anant Madabhushi

Medical Image Anal., 2014

Information processing in computer-assisted interventions: 4th international conference, 2013.

Dean C. Barratt, Pierre Jannin, Gabor Fichtinger, Stephane Cotin

Int. J. Comput. Assist. Radiol. Surg., 2014

Spatially aware expectation maximization (SpAEM): application to prostate TRUS segmentation.

Mahdi Orooji, Rachel Sparks, B. Nicolas Bloch, Ernest J. Feleppa, Dean C. Barratt, Anant Madabhushi

Proceedings of the Medical Imaging 2014: Image Processing, 2014

A hybrid biomechanical model-based image registration method for sliding objects.

Lianghao Han, David J. Hawkes, Dean C. Barratt

Proceedings of the Medical Imaging 2014: Image Processing, 2014

2013

A novel Bayesian respiratory motion model to estimate and resolve uncertainty in image-guided cardiac interventions.

Devis Peressutti, Graeme P. Penney, Richard James Housden, Christoph Kolbitsch, Alberto Gómez, Erik-Jan Rijkhorst, Dean C. Barratt, Kawal S. Rhode, Andrew P. King

Medical Image Anal., 2013

Surface-based prostate registration with biomechanical regularization.

Wendy J. M. van de Ven, Yipeng Hu, Jelle O. Barentsz, Nico Karssemeijer, Dean C. Barratt, Henkjan J. Huisman

Proceedings of the Medical Imaging 2013: Image-Guided Procedures, 2013

Fully automated prostate magnetic resonance imaging and transrectal ultrasound fusion via a probabilistic registration metric.

Rachel Sparks, B. Nicolas Bloch, Ernest J. Feleppa, Dean C. Barratt, Anant Madabhushi

Proceedings of the Medical Imaging 2013: Image-Guided Procedures, 2013

Study on liver blood vessel movement during breathing cycle.

Rahul Prasanna Kumar, Erik-Jan Rijkhorst, Oliver M. Geier, Dean C. Barratt, Ole Jakob Elle

Proceedings of the Colour and Visual Computing Symposium, 2013

2012

MR to ultrasound registration for image-guided prostate interventions.

Yipeng Hu, Hashim Uddin Ahmed, Zeike A. Taylor, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt

Medical Image Anal., 2012

Estimating and resolving uncertainty in cardiac respiratory motion modelling.

Devis Peressutti, Erik-Jan Rijkhorst, Dean C. Barratt, Graeme P. Penney, Andy P. King

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011

Modelling Prostate Motion for Data Fusion During Image-Guided Interventions.

Yipeng Hu, Timothy J. Carter, Hashim Uddin Ahmed, Mark Emberton, Clare Allen, David J. Hawkes, Dean C. Barratt

IEEE Trans. Medical Imaging, 2011

Effects of Respiratory Liver Motion on Heating for Gated and Model-Based Motion-Compensated High-Intensity Focused Ultrasound Ablation.

Erik-Jan Rijkhorst, Ian Rivens, Gail ter Haar, David J. Hawkes, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

2010

Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift.

Yipeng Hu, Erik-Jan Rijkhorst, Richard Manber, David J. Hawkes, Dean C. Barratt

Proceedings of the Medical Imaging and Augmented Reality - 5th International Workshop, 2010

Simulating Dynamic Ultrasound Using MR-derived Motion Models to Assess Respiratory Synchronisation for Image-Guided Liver Interventions.

Erik-Jan Rijkhorst, Daniel Heanes, Freddy Odille, David J. Hawkes, Dean C. Barratt

Proceedings of the Information Processing in Computer-Assisted Interventions, 2010

2009

MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions.

Yipeng Hu, Hashim Uddin Ahmed, Clare Allen, Doug Pendsé, Mahua Sahu, Mark Emberton, David J. Hawkes, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2008

Model-based blood flow quantification from rotational angiography.

Irina Wächter, Jörg Bredno, Roel Hermans, Jürgen Weese, Dean C. Barratt, David J. Hawkes

Medical Image Anal., 2008

Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging.

Dean C. Barratt, Carolyn S. K. Chan, Philip J. Edwards, Graeme P. Penney, Mike Slomczykowski, Timothy J. Carter, David J. Hawkes

Medical Image Anal., 2008

A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions.

Yipeng Hu, Dominic Morgan, Hashim Uddin Ahmed, Doug Pendsé, Mahua Sahu, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

MR Navigated Breast Surgery: Method and Initial Clinical Experience.

Timothy J. Carter, Christine Tanner, Nicolas Beechey-Newman, Dean C. Barratt, David J. Hawkes

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Modelling Prostate Gland Motion for Image-Guided Interventions.

Yipeng Hu, Dominic Morgan, Hashim Uddin Ahmed, Doug Pendsé, Mahua Sahu, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt

Proceedings of the Biomedical Simulation, 4th International Symposium, 2008

Quantifying blood flowdivision at bifurcations from rotational angiography.

Irina Wächter, Jörg Bredno, Roel Hermans, Dean C. Barratt, Jürgen Weese, David J. Hawkes

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007

Quantification of Blood Flow from Rotational Angiography.

Irina Wächter, Jörg Bredno, Dean C. Barratt, Jürgen Weese, David J. Hawkes

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Motion and Biomechanical Models for Image-Guided Interventions.

David J. Hawkes, Graeme P. Penney, David Atkinson, Dean C. Barratt, Jane M. Blackall, Timothy J. Carter, William R. Crum, Jamie McClelland, Christine Tanner, Ségolène M. Tarte, Mark White

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

2006

Self-calibrating 3D-ultrasound-based bone registration for minimally invasive orthopedic surgery.

Dean C. Barratt, Graeme P. Penney, Carolyn S. K. Chan, Mike Slomczykowski, Timothy J. Carter, Philip J. Edwards, David J. Hawkes

IEEE Trans. Medical Imaging, 2006

Cadaver validation of intensity-based ultrasound to CT registration.

Graeme P. Penney, Dean C. Barratt, Carolyn S. K. Chan, Mike Slomczykowski, Timothy J. Carter, Philip J. Edwards, David J. Hawkes

Medical Image Anal., 2006

2005

Operator dependence of 3-D ultrasound-based computational fluid dynamics forthe carotid bifurcation.

Fadi Glor, Ben B. Ariff, Alun D. Hughes, Pascal R. Verdonck, Simon A. Thom, Dean C. Barratt, X. Yun Xu

IEEE Trans. Medical Imaging, 2005

Tissue deformation and shape models in image-guided interventions: a discussion paper.

David J. Hawkes, Dean C. Barratt, Jane M. Blackall, Carolyn S. K. Chan, Philip J. Edwards, Kawal S. Rhode, Graeme P. Penney, Jamie McClelland, Derek L. G. Hill

Medical Image Anal., 2005

Self-Calibrating Ultrasound-to-CT Bone Registration.

Dean C. Barratt, Graeme P. Penney, Carolyn S. K. Chan, Mike Slomczykowski, Timothy J. Carter, Philip J. Edwards, David J. Hawkes

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

2004

Reconstruction and quantification of the carotid artery bifurcation from 3-D ultrasound images.

Dean C. Barratt, Ben B. Ariff, Keith N. Humphries, Simon A. Thom, Alun D. Hughes

IEEE Trans. Medical Imaging, 2004

Cadaver Validation of the Use of Ultrasound for 3D Model Instantiation of Bony Anatomy in Image Guided Orthopaedic Surgery.

Carolyn S. K. Chan, Dean C. Barratt, Philip J. Edwards, Graeme P. Penney, Mike Slomczykowski, Timothy J. Carter, David J. Hawkes

Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

2003

Measuring and Modeling Soft Tissue Deformation for Image Guided Interventions.

David J. Hawkes, Philip J. Edwards, Dean C. Barratt, Jane M. Blackall, Graeme P. Penney, Christine Tanner

Proceedings of the Surgery Simulation and Soft Tissue Modeling, International Symposium, 2003