Davy Weissenbacher

According to our database, Davy Weissenbacher authored at least 40 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Detecting goals of care conversations in clinical notes with active learning.

Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez

J. Biomed. Informatics, 2024

Automatic sentence segmentation of clinical record narratives in real-world data.

Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez

Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

2023

Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.

Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez

Database J. Biol. Databases Curation, February, 2023

2022

Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022.

Davy Weissenbacher, Juan M. Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Ana Lucía Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez

Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022

2021

Active neural networks to detect mentions of changes to medication treatment in social media.

Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez

J. Am. Medical Informatics Assoc., 2021

DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter.

Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez

J. Am. Medical Informatics Assoc., 2021

Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021.

Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez

Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021

Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines.

Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez

Proceedings of the Artificial Intelligence in Medicine, 2021

2020

GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.

Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch

Bioinform., 2020

Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020.

Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez

Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, 2020

2019

Towards scaling Twitter for digital epidemiology of birth defects.

Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez

npj Digit. Medicine, 2019

Deep neural networks ensemble for detecting medication mentions in tweets.

Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez

J. Am. Medical Informatics Assoc., 2019

Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019.

Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez

Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, 2019

SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.

Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez

Proceedings of the 13th International Workshop on Semantic Evaluation, 2019

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.

Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Text Mining and Machine Learning for Precision Medicine.

Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter.

Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez

J. Biomed. Informatics, 2018

Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research.

Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez

CoRR, 2018

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.

Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez

Bioinform., 2018

Deep neural networks and distant supervision for geographic location mention extraction.

Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez

Bioinform., 2018

Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018.

Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez

Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, 2018

Dealing with Medication Non-Adherence Expressions in Twitter.

Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez

Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, 2018

2017

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.

Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch

Database J. Biol. Databases Curation, 2017

2016

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.

Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez

J. Am. Medical Informatics Assoc., 2016

Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia.

Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez

Proceedings of the NAACL HLT 2016, 2016

2015

Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.

Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez

Bioinform., 2015

DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter.

Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez

Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

Tree-Structured Named Entities Extraction from Competing Speech Transcriptions.

Davy Weissenbacher, Christian Raymond

Proceedings of the Natural Language Processing and Information Systems, 2015

2014

Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.

Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez

Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

2013

Which Factors Contribute to Resolving Coreference Chains with Bayesian Networks?.

Davy Weissenbacher, Yutaka Sasaki

Int. J. Comput. Linguistics Appl., 2013

2011

Understand the effects of erroneous annotations produced by NLP pipelines, a case study on the pronominal anaphora resolution.

Davy Weissenbacher, Adeline Nazarenko

Trait. Autom. des Langues, 2011

2009

ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences.

Davy Weissenbacher, Elisa Pieri, Sophia Ananiadou, Brian Rea, Farida Vis, Yuwei Lin, Rob Procter, Peter Halfpenny

Proceedings of the Actes de la 16ème conférence sur le Traitement Automatique des Langues Naturelles. Démonstrations, 2009

2008

Influence des annotations imparfaites sur les systèmes de Traitement Automatique des Langues, un cadre applicatif: la résolution de l'anaphore pronominale. (Effects of imperfect annotations on Natural Language Processing systems, an applicative case study: the pronominal anaphora resolution).

Davy Weissenbacher

PhD thesis, 2008

2007

Les réseaux bayésiens : un formalisme adapté au traitement automatique des langues ?

Davy Weissenbacher

Rev. d'Intelligence Artif., 2007

Identifier les pronoms anaphoriques et trouver leurs antécédents : l'intérêt de la classification bayésienne.

Davy Weissenbacher, Adeline Nazarenko

Proceedings of the Actes de la 14ème conférence sur le Traitement Automatique des Langues Naturelles. Articles longs, 2007

2006

The ALVIS Format for Linguistically Annotated Documents.

Adeline Nazarenko, Érick Alphonse, Julien Derivière, Thierry Hamon, Guillaume Vauvert, Davy Weissenbacher

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

Bayesian Network, a Model for NLP?

Davy Weissenbacher

Proceedings of the EACL 2006, 2006

Une infrastructure pour l'annotation linguistique de documents issus du web : le projet ALVIS.

Sophie Aubin, Julien Derivière, Thierry Hamon, Adeline Nazarenko, Thierry Poibeau, Davy Weissenbacher

Proceedings of the Apprentissage Artificiel et Fouille de Données, 2006

2004

La relation de synonymie en génomique.

Davy Weissenbacher

Proceedings of the Actes de la 11ème conférence sur le Traitement Automatique des Langues Naturelles. REncontres jeunes Chercheurs en Informatique pour le Traitement Automatique des Langues (Posters), 2004

Event-Based Information Extraction for the Biomedical Domain: the Caderige Project.

Érick Alphonse, Sophie Aubin, Philippe Bessières, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain-Pierre Manine, Claire Nédellec, Mohamed Ould Abdel Vetah, Thierry Poibeau, Davy Weissenbacher

Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004