Davis J. McCarthy

According to our database, Davis J. McCarthy authored at least 13 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

An Interpretable and Accurate Deep-Learning Diagnosis Framework Modeled With Fully and Semi-Supervised Reciprocal Learning.

Chong Wang, Yuanhong Chen, Fengbei Liu, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Helen Frazer, Davis James McCarthy, Gustavo Carneiro

IEEE Trans. Medical Imaging, January, 2024

BRAIxDet: Learning to detect malignant breast lesion with incomplete annotations.

Yuanhong Chen, Yuyuan Liu, Chong Wang, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Yu Tian, Fengbei Liu, Helen Frazer, Davis J. McCarthy, Gustavo Carneiro

Medical Image Anal., 2024

2023

Mixture of Gaussian-distributed Prototypes with Generative Modelling for Interpretable Image Classification.

Chong Wang, Yuanhong Chen, Fengbei Liu, Davis James McCarthy, Helen Frazer, Gustavo Carneiro

CoRR, 2023

Technical outlier detection via convolutional variational autoencoder for the ADMANI breast mammogram dataset.

Hui Li, Carlos A. Peña-Solórzano, Susan Wei, Davis J. McCarthy

CoRR, 2023

Learning Support and Trivial Prototypes for Interpretable Image Classification.

Chong Wang, Yuyuan Liu, Yuanhong Chen, Fengbei Liu, Yu Tian, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro

Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022

Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation.

Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro

CoRR, 2022

Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.

Hui Li, Davis J. McCarthy, Heejung Shim, Susan Wei

BMC Bioinform., 2022

Knowledge Distillation to Ensemble Global and Interpretable Prototype-Based Mammogram Classification Models.

Chong Wang, Yuanhong Chen, Yuyuan Liu, Yu Tian, Fengbei Liu, Davis J. McCarthy, Michael Elliott, Helen Frazer, Gustavo Carneiro

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation.

Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Yuyuan Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

2017

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.

Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills

Bioinform., 2017

2010

<tt>edgeR</tt>: a Bioconductor package for differential expression analysis of digital gene expression data.

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

Bioinform., 2010

2009

Testing significance relative to a fold-change threshold is a TREAT.

Davis J. McCarthy, Gordon K. Smyth

Bioinform., 2009