David R. Westhead

According to our database, David R. Westhead authored at least 38 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Making Multi-Axis Gaussian Graphical Models Scalable to Millions of Samples and Features.

Bailey Andrew, David R. Westhead, Luisa Cutillo

CoRR, 2024

GmGM: a fast multi-axis Gaussian graphical model.

Ethan B. Andrew, David R. Westhead, Luisa Cutillo

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2024

2022

antGLasso: An Efficient Tensor Graphical Lasso Algorithm.

Andrew Bailey, David R. Westhead, Luisa Cutillo

CoRR, 2022

2019

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets.

M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A.-Ling, Berthold Göttgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead

PLoS Comput. Biol., 2019

Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing.

Georgette Tanner, David R. Westhead, Alastair P. Droop, Lucy F. Stead

Bioinform., 2019

2011

KvSNP: accurately predicting the effect of genetic variants in voltage-gated potassium channels.

Lucy F. Stead, I. C. Wood, David R. Westhead

Bioinform., 2011

2010

Simple sequence-based kernels do not predict protein-protein interactions.

Jiantao Yu, Maozu Guo, Chris J. Needham, Yangchao Huang, Lu Cai, David R. Westhead

Bioinform., 2010

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite <i>Plasmodium falciparum</i>.

Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead

Bioinform., 2010

MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.

Thomas Forth, Glenn A. McConkey, David R. Westhead

Bioinform., 2010

2009

metaTIGER: a metabolic evolution resource.

John W. Whitaker, Ivica Letunic, Glenn A. McConkey, David R. Westhead

Nucleic Acids Res., 2009

From gene expression to gene regulatory networks in Arabidopsis thaliana.

Chris J. Needham, Iain W. Manfield, Andrew J. Bulpitt, Philip M. Gilmartin, David R. Westhead

BMC Syst. Biol., 2009

Bayesian Data Integration and Enrichment Analysis for Predicting Gene Function in Malaria.

Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead

Proceedings of the Mathematical Theory and Computational Practice, 2009

2007

A Primer on Learning in Bayesian Networks for Computational Biology.

Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead

PLoS Comput. Biol., 2007

Bayesian refinement of protein functional site matching.

Kanti V. Mardia, Vysaul B. Nyirongo, Peter J. Green, Nicola D. Gold, David R. Westhead

BMC Bioinform., 2007

Deleterious SNP prediction: be mindful of your training data!

Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead

Bioinform., 2007

2006

<i>Arabidopsis</i> Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.

Iain W. Manfield, Chih-Hung Jen, John W. Pinney, Ioannis Michalopoulos, James R. Bradford, Philip M. Gilmartin, David R. Westhead

Nucleic Acids Res., 2006

metaSHARK: a WWW platform for interactive exploration of metabolic networks.

Christopher Hyland, John W. Pinney, Glenn A. McConkey, David R. Westhead

Nucleic Acids Res., 2006

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks.

Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, Matthew A. Care, David R. Westhead

BMC Bioinform., 2006

2005

TMB-Hunt: a web server to screen sequence sets for transmembrane ß-barrel proteins.

Andrew G. Garrow, Alison Agnew, David R. Westhead

Nucleic Acids Res., 2005

TmaDB: a repository for tissue microarray data.

Archana Sharma-Oates, Philip Quirke, David R. Westhead

BMC Bioinform., 2005

TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.

Andrew G. Garrow, Alison Agnew, David R. Westhead

BMC Bioinform., 2005

Protein structure topological comparison, discovery and matching service.

Gilleain M. Torrance, David R. Gilbert, Ioannis Michalopoulos, David R. Westhead

Bioinform., 2005

Improved prediction of protein-Cprotein binding sites using a support vector machines approach.

James R. Bradford, David R. Westhead

Bioinform., 2005

2004

TOPS: an enhanced database of protein structural topology.

Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, David R. Westhead

Nucleic Acids Res., 2004

2003

A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function.

Vidhya Gomathi Krishnan, David R. Westhead

Bioinform., 2003

Calculation of Helix Packing Angles in Protein Structures.

James A. R. Dalton, Ioannis Michalopoulos, David R. Westhead

Bioinform., 2003

2002

AI-based Algorithms for Protein Surface Comparisons.

Steven J. Pickering, Andrew J. Bulpitt, Nick Efford, Nicola D. Gold, David R. Westhead

Comput. Chem., 2002

A Computer System to Perform Structure Comparison using Representations of Protein Structure.

David R. Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton

Comput. Chem., 2002

Bioinformatics.

David R. Westhead, John Howard Parish, Richard M. Twyman

Instant notes, BIOS Scientific Publishers, ISBN: 978-1-85996-272-5, 2002

2000

Une technique déclarative pour filtrer des motifs topologiques de protéines.

David R. Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon

Proceedings of the Programmation en logique avec contraintes, 2000

1999

Motif-based searching in TOPS protein topology databases.

David R. Gilbert, David R. Westhead, Nozomi Nagano, Janet M. Thornton

Bioinform., 1999

1997

A comparison of heuristic search algorithms for molecular docking.

David R. Westhead, David E. Clark, Christopher W. Murray

J. Comput. Aided Mol. Des., 1997

PRO_SELECT: Combining structure-based drug design and combinatorial chemistry for rapid lead discovery. 1. Technology.

Christopher W. Murray, David E. Clark, Timothy R. Auton, Michael A. Firth, Jin Li, Richard A. Sykes, Bohdan Waszkowycz, David R. Westhead, Stephen C. Young

J. Comput. Aided Mol. Des., 1997

1996

Active-site-directed 3D database searching: Pharmacophore extraction and validation of hits.

David E. Clark, David R. Westhead, Richard A. Sykes, Christopher W. Murray

J. Comput. Aided Mol. Des., 1996

Evolutionary algorithms in computer-aided molecular design.

David E. Clark, David R. Westhead

J. Comput. Aided Mol. Des., 1996

1995

PRO_LIGAND: An approach to de novo molecular design. 3. A genetic algorithm for structure refinement.

David R. Westhead, David E. Clark, David Frenkel, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz

J. Comput. Aided Mol. Des., 1995

PRO_LIGAND: An approach to de novo molecular design. 4. Application to the design of peptides.

David Frenkel, David E. Clark, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead

J. Comput. Aided Mol. Des., 1995

PRO_LIGAND: An approach to de novo molecular design. 1. Application to the design of organic molecules.

David E. Clark, David Frenkel, Stephen A. Levy, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead

J. Comput. Aided Mol. Des., 1995